Difference between revisions of "Main Page"
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*[http://code.google.com/p/obo-relations/ OBO relation ontology] | *[http://code.google.com/p/obo-relations/ OBO relation ontology] | ||
*[http://wiki.geneontology.org/index.php/Reasoner_Overview Reasoner Overview] | *[http://wiki.geneontology.org/index.php/Reasoner_Overview Reasoner Overview] | ||
+ | * [[Asserted and inferred relations in the PO]] | ||
'''Principles, Rationales and Key Organizing Rules of the PO''' | '''Principles, Rationales and Key Organizing Rules of the PO''' |
Revision as of 07:37, 3 April 2012
Welcome to the Plant Ontology Wiki
Plant Ontology Consortium Resources
- Plant Ontology Home
- Search or browse the Plant Ontology
- Release notes the most recent information on the database and website changes.
- Downloads
About the Plant Ontology project
- Overview of the PO project
- POC charter Describes the Consortium's responsibilities and how can you participate in its activities.
- Citing POC How to cite POC in your article
- File:PO brochure final (LC 7-21-11).pdf
PO Releases and Database Updates
Visit the pages below for specific details on each release
Next Scheduled: TBA
POC Meetings
POC weekly meetings
Minutes of the Plant Ontology Consortium meetings
POC workshops and other meetings
POC_Meeting and Workshop June 29th and 30th, 2010 Corvallis, OR
POC Meeting and Workshop Nov 4th to 6th, 2010; NYBG, Bronx, NY
POC Meeting at NYBG; Sept 10th-11th, 2011
Wood_anatomy_ontology_meeting,_2012_at_NYBG,_agenda
Crop Ontology Workshop at OSU, 2012
POC Collaborators
Angiosperm Phylogeny Web Glossary
Minimal Anatomical Terminology
NASC Nottingham Arabidopsis Stock Centre
Ontology for Biomedical Investigations
Solanaceae Genome network (SGN)
* New *
Potential new collaborators: eMonocot, CoGe, Cycad Pages, Oregon Flora Project
Outreach
- Plant Ontology Tutorials
- Introduction to the project (slide show)
Publications and Other Resources
- Related Publications References and citations of interest on ontology, published by the PO consortium and collaborators.
- Plant Ontology Citations Publications from outside the consortium that discuss the PO or use it in their analyses.
If you are aware of a publication that is not on this list, please send us the citation and we will add it.
- Ontology Resources Links to other projects working on ontologies
Plant Ontology Development Guidelines
Developers style guide
Descriptions of relations in the PO
- Relations in the Plant Ontology
- OBO relation ontology
- Reasoner Overview
- Asserted and inferred relations in the PO
Principles, Rationales and Key Organizing Rules of the PO
The first three pages listed below are not up to date.
- Plant Structure Ontology Rationale for high nodes in the ontology, examples and explanation of three "patterns" of the ontology structure.
- Growth Stages Ontology and frequently asked questions
- Developmental Stages Ontology
- Protocols page for Plant Ontology Releases: PO Release SOP Page
Ontology accessions
DBXrefs
- Database cross reference abbreviations used in the ontology files and the database
- Database cross reference file on the SVN- current
- Custom references maintained by PO, for items without a standard url abbreviation, can be viewed at PO references
- the Plant Ontology curators page provides a list of ontology curators and editors, with their affiliations.
Formats of the Ontology Files
- OBO format: Plant Ontology follows the Gene Ontology's: OBO Flat File Format Specification, version 1.2
- OWL Format:
Preparation and Display of Annotation Files
- If your database/project would like to submit annotations to the PO database, please consult the suggested file format: Annotation Association File Format and the GO gaf 2.0 format
- For more information about how to use column 16: PO_Annotation_Extensions_(column_16)#Specific_suggestions_for_column_16
- See also Google docs spread sheet with specific suggestions of what terms and relations to put in column 16.
- Adding "Associated to" links to GO (final table column in the association view)
Other
Calendar (POC outreach schedule)