Difference between revisions of "Main Page"
(→Other) |
|||
| Line 104: | Line 104: | ||
Upcoming release page [[Upcoming 2011 Release Page]] | Upcoming release page [[Upcoming 2011 Release Page]] | ||
| + | |||
| + | == Plant Ontology Development Guidelines == | ||
| + | ''' Developers style guide ''' | ||
| + | * [[PO_Developers_Guide]] | ||
| + | '''Descriptions of relations in the PO''' | ||
| + | *[[Relations in the Plant Ontology]] | ||
| + | *[http://www.obofoundry.org/ro/ OBO relation ontology] | ||
| + | |||
| + | '''Principles, Rationales and Key Organizing Rules of the PO''' | ||
| + | * [[Plant_Structure_Principles_Rules|Plant Structure Ontology]] Rationale for high nodes in the ontology, examples and explanation of three "patterns" of the ontology structure. | ||
| + | * [[Growth_Stages_Ontology_Principles|Growth Stages Ontology]] and [[Growth_Stages_Ontology_FAQ|frequently asked questions]] | ||
| + | * [[Developmental_Stages_Ontology_Principles|Developmental Stages Ontology]] | ||
| + | * SOP page for Plant Ontology Releases [[PO Release SOP Page]] | ||
| + | |||
| + | ''' Ontology accessions ''' | ||
| + | * [[Accession_IDS_Guide|Guide to unique accessions/ids associated to each PO term]] | ||
| + | |||
| + | ''' DBXrefs ''' | ||
| + | * [http://plantontology.org/docs/dbxref/PO_DBXref.txt Database cross reference abbreviations used in the ontology files and the database] | ||
| + | ''' Flat file formats ''' | ||
| + | * [http://www.geneontology.org/GO.format.obo-1_2.shtml Ontology file format] | ||
| + | * [[Annotation_File_Format|Annotation file format]] If your database/project would like to submit annotations to the PO database, please consult the suggested file format. | ||
== Other == | == Other == | ||
Revision as of 21:34, 18 July 2011
Welcome to the Plant Ontology Wiki
Plant Ontology Consortium Resources
- Plant Ontology Home
- Search or browse the Plant Ontology
- Release notes the most recent information on the database and website changes.
- Downloads
About the project
- Overview of the PO project
- POC charter Describes the Consortium's responsibilities and how can you participate in its activities.
- Citing POC How to cite POC in your article
POC Meetings
POC weekly meetings
Minutes of the Plant Ontology Consortium meetings
POC workshops and other meetings
POC Meeting and Workshop June 29th and 30th, Corvallis, OR
POC Meeting and Workshop Nov 4th to 6th, NYBG, Bronx, NY
POC Collaborators
Angiosperm Phylogeny Web Glossary
European Arabidopsis Stock Centre NASC
Ontology for Biomedical Investigations
PAG 2011 Collaborators Workshop
Outreach
2011
- Plant Biology 2011 Outreach Booth
- PAG 2011 Collaborators Workshop
- IBC_2011_Bio-Ontologies_Symposium
- Plant Ontology Webinar- May 2011 release
2010
- Plant Biology 2010 Outreach Booth: Plant Genome Resources Outreach Booth
- International Conference on Biomedical Ontologies
- Plant Ontology Tutorials
- Introduction to the project (slide show)
Publications and Other Resources
- Related Publications References and citations of interest on ontology, published by consortium members and collaborators.
- Plant Ontology Citations Publications from outside the consortium that discuss the PO or use it in their analyses.
If you are aware of a publication that is not on this list, please send us the citation and we will add it.
- Ontology Resources Links to other projects working on ontologies
PO Updates
October 2010 release: 2010 Release Page
January 2011 release Jan 2011 Release Page
May 2011 release May 2011 Release Page
Upcoming release page Upcoming 2011 Release Page
Plant Ontology Development Guidelines
Developers style guide
Descriptions of relations in the PO
Principles, Rationales and Key Organizing Rules of the PO
- Plant Structure Ontology Rationale for high nodes in the ontology, examples and explanation of three "patterns" of the ontology structure.
- Growth Stages Ontology and frequently asked questions
- Developmental Stages Ontology
- SOP page for Plant Ontology Releases PO Release SOP Page
Ontology accessions
DBXrefs
Flat file formats
- Ontology file format
- Annotation file format If your database/project would like to submit annotations to the PO database, please consult the suggested file format.
Other
Calendar (POC outreach schedule)
