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Welcome to the Plant Ontology Wiki


Contents

Plant Ontology Consortium Resources

About the Plant Ontology project

PO Releases and Database Updates

Visit the pages below for specific details on each release

Next Release: Release 21 Tentatively Scheduled for the Spring 2014

Latest Release #20: August 2013 Release_20

Release #19 January, 2013 Release_19

Release #18 July 2012 Release

Release #17 April 2012 Release Page

Release #16 October 2011 Release Page

Release #15 May 2011 Release Page

Release #14 Jan 2011 Release Page

Release #13 October 2010 Release Page

POC Meetings

POC weekly meetings

Minutes of the Plant Ontology Consortium meetings

POC workshops and other meetings

PRO-PO-GO_Meeting Buffalo, NY May 2013

Plant_Ontology_and_Crop_Annotation_Workshop_OSU_2012

Wood_anatomy_ontology_meeting,_2012_at_NYBG,_agenda

POC Meeting at NYBG; Sept 10th-11th, 2011

POC Meeting and Workshop Nov 4th to 6th, 2010; NYBG, Bronx, NY

POC_Meeting and Workshop June 29th and 30th, 2010 Corvallis, OR

POC Technical Issues Page

Affiliated Ontologies

Plant Disease Ontology

Plant Stress Ontology

Plant Trait Ontology

Plant Environment Ontology

Cell Ontology

Gene Ontology

GCP Crop Ontology

Ontology for Biomedical Investigations

Plant Phenotype Ontology

Population and Community Ontology

POC Collaborators

ABRC

AgBase

Agron-Omics

Angiosperm Phylogeny Web Glossary

BAR

Cosmoss-_Physcomitrella

CRIBI- Grape Genomics

Flora of North America- FNA

Genome Database for Rosaceae

Gramene

Live Plant Image Group

MaizeGDB

MorphoBank

Minimal Anatomical Terminology

NASC Nottingham Arabidopsis Stock Centre

OBO Foundry

Oryzabase

Oak Ridge National Lab-ORNL

Phenoscape

PlantSystematics.org

PLEXdb

Solanaceae Genome network (SGN)

SoyBase

SSWAP

TraitNet

Wood Anatomy

* New *

Wheat Gene Catalog

JSTOR Herbarium Annotations

Potential new collaborators:

eMonocot

CoGe

Cycad Pages

Oregon Flora Project

MASISH- Maize Seed In Situ Hybridization database

International Society of Root Research

List of user group contacts


Links to sites using the PO

Ontology Annotations

Preparation and Display of Annotation Files

PO Annotations page links to Category:Annotations

Outreach

Publications and Other Resources

  • Related Publications References and citations of interest on ontology, published by the PO consortium and collaborators.

If you are aware of a publication that is not on this list, please send us the citation and we will add it.

Plant Ontology Development Guidelines

Developers style guide

Descriptions of relations in the PO

Principles, Rationales and Key Organizing Rules of the PO

The first three pages listed below are not up to date.

Formats of the Ontology Files


Ontology accessions


DBXrefs

  • link to Dbxrefs file on SVN: dbxrefs
  • Database cross reference file on the SVN- current
  • Custom references maintained by PO, for items without a standard url abbreviation, can be viewed at PO references
  • The Plant Ontology curators page provides a list of ontology curators and editors, with their affiliations.
  • Xrefs to SourceForge trackers in the OBO file: There are two types of xrefs: prior to mid 2013, they were entered as: OBO_SF_PO:XXXXXXX (7 digit number). After the revision of the SourceForge tracker software in mid 2013, the new Xref format is: OBO_SF2_PO:xxx
    • Helpful hint: to create a link in the tracker to another tracker, use: [plant-ontology-po-term-requests:#xxx]


Requesting new ontology terms, or changes to existing terms

Other

Calendar (POC outreach schedule)

Wiki meta links

Personal tools
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