AgBase

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AgBase

Adding annotations for seed trichome terms to describe the development of cotton fibers

  • seed trichome (PO:0004511)
  • petal (PO:0009032)
  • root (PO:0009005)
  • anther (PO:0009066)
  • vascular leaf (PO:0009025)


  • seed trichome development stage (PO:0025369)
  • seed trichome elongation stage (PO:0025371) [38]
  • seed trichome initiation stage PO:0025371 [17]
  • seed trichome secondary wall biosynthesis stage (PO:0025372) [4]


  • embryo stage (PO:0007631)
  • endosperm development stages (PO:0007633)
  • anther developmental stages (PO:0001004)
  • leaf development stages (PO:0001050)
  • root development stages (PO:0007520)
  • petal differentiation and expansion stage (PO:0007611)

DbxRefs for Annotations

Need to create stanza

maizeGDB example:


abbreviation: MaizeGDB

database: Maize Genetics and Genomics Database

object: Anything with a MaizeGDB Object ID Number or Gene Model Name

example_id: MaizeGDB:881225

generic_url: http://www.maizegdb.org/

url_syntax: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=[example_id]

url_example: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=881225


abbreviation: AgBase

database: AgBase

object: Anything with a Uniprot Gene Name or GenBank ID or GO ID

example_id: AgBase:Q8VWP8

generic_url: http://agbase.msstate.edu/index.html

url_syntax: http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB/TrEMBL&uid=[example_id]_GOSHI&gb_acc=[example_id]

url_example: http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB/TrEMBL&uid=Q8VWP8_GOSHI&gb_acc=Q8VWP8

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