Plant Pheontype Pilot Project 2015
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Jump to navigationJump to searchAssociation data developed from the Plant Phenotype Pilot Project paper published in Feb 2015: "An ontology approach to comparative phenomics in plants"
- Six plant species: Rice, Maize, Arabidopsis, soybean, Medicago, tomato
EQ files for this dataset can be found on the iPlant data store
The number of EQ statements, genes, genotypes, and phenotypes they were associated with, for six plant species
Species | #EQs
(phenes) |
#unique EQs -
all genotypes |
#genes | #genotypes | #phenotypes |
---|---|---|---|---|---|
Arabidopsis thaliana | 5172 | 1260 | 2393 | 2393* | 1385 |
Zea mays ssp mays | 373 | 180 | 114 | 169 | 117 |
Oryza sativa L. | 340 | 271 | 92 | 95 | 86 |
Solanum lycopersicum | 269 | 174 | 72 | 128 | 90 |
Medicago truncatula | 149 | 99 | 40 | 45 | 40 |
Glycene max | 61 | 39 | 30 | 30* | 24 |
Total | 6364 | 2023 | 2741 | 2866 | 1742 |
The number of EQ statements, genes, genotypes, and phenotypes they were associated with, for each species.
'#Genotypes equals # genes because no information on alleles was available for these species.
Oellrich et al. Plant Methods 2015 11:10 doi:10.1186/s13007-015-0053-y