Plant Pheontype Pilot Project 2015

Association data developed from the Plant Phenotype Pilot Project paper published in Feb 2015: "An ontology approach to comparative phenomics in plants"

• Six plant species: Rice, Maize, Arabidopsis, soybean, Medicago, tomato

See: Rice_IMP,_Gramene_Genes

EQ files for this dataset can be found on the iPlant data store

From Oellrich et al.:

• The number of EQ statements, genes, genotypes, and phenotypes they were associated with, for six plant species

Species	#EQs (phenes)	#unique EQs - all genotypes	#genes	#genotypes	#phenotypes
Arabidopsis thaliana	5172	1260	2393	2393*	1385
Zea mays ssp mays	373	180	114	169	117
Oryza sativa L.	340	271	92	95	86
Solanum lycopersicum	269	174	72	128	90
Medicago truncatula	149	99	40	45	40
Glycene max	61	39	30	30*	24
Total	6364	2023	2741	2866	1742

'#Genotypes equals # genes because no information on alleles was available for these species.

Oellrich et al. Plant Methods 2015 11:10 doi:10.1186/s13007-015-0053-y