Zea mays Leaf Dev Li et al, 2010

From Plant Ontology Wiki
Revision as of 22:12, 20 October 2013 by Cooperl (talk | contribs)
Jump to navigationJump to search

Data set to be added in Release #21 Nov 2013, based on Li et al (2010)

Background:

The study authors analyzed the maize leaf transcriptome using Illumina sequencing. We mapped more than 120 million reads to define gene structure and alternative splicing events and to quantify transcript abundance along a leaf developmental gradient and in mature bundle sheath and mesophyll cells.

Figure 1 (Li et al, 2010).png


The samples were mapped to PO ids representing the plant structures and plant growth stages used.


PO anatomy and growth stage mapping table:

Tissue Paper description PO Anatomy term; PO ID PO Development stage term; PO ID Comments
Leaf base base, 1 cm above the leaf three ligule leaf lamina base; PO:0008019, vascular leaf; PO:0009025 represents sink tissue