New terms and obsolete terms for Jan2011 release

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Back to Jan 2011 Release Page

Back to Summary of Changes to PO Jan2011

List of Obsoleted Terms

Consider pollen tube cell (PO:0025195). New term pollen tube has been requested in GO; waiting for GO ID.

Consider pollen tube cell (PO:0025195). New term pollen tube tip has been requested in GO; waiting for GO ID.

This term was not made obsolete. Instead the name was changed to 'root hair cell'(PO:0000256). This is because the definition of the term was for a cell, not just for the hair.

Annotations that belong only to the cell extension should be moved to root hair (GO:0035618) To describe only the cell extension, or root hair tip (GO:0035619).

Consider root hair cell (PO:0000256), or root hair tip (GO:0035619).

Consider carpel epidermis (PO:0025096), petal epidermis (PO:0006041), sepal epidermis (PO:0006040), stamen epidermis (PO:0025097), or tepal epidermis (PO:0025184)

Replaced by root elongation zone (PO:0025181).

Consider: PO:0025166 papilla cell, PO:0025167 leaf papilla cell, PO:0025168 stigma papilla cell, or GO:0090395 plant cell papilla, GO:0090396 leaf papilla, GO:0090397 stigma papilla

  • trichome branch (PO:0008031) (replaced by 'multicellular trichome branch cell' in PO plus unicellular trichome branch in GO):No Annotations
  • differentiation zone (PO:0020135)-(replaced by root differentiation zone; PO:0020135)
  • basal endosperm transfer layer (PO:0009019) (created new term with same name, but new def'n and id) No annotations

Replaced by new term primary root elongation zone (PO:0025257).

Replaced by new term lateral root elongation zone (PO:0025256).

Others:

  • floral stomatal complex (PO:0008044): no annotations
  • floral guard cell (PO:0008045): no annotations
  • floral stomatal pore (PO:0008046): no annotations

List of New Terms-general:

  • plant anatomical entity (PO:0025131): An anatomical entity (CARO:0000000) that is or was part of a plant.
  • plant anatomical space (PO:0025117): An anatomical space (CARO:0000005) that is part of a plant.
  • axil (child of plant anatomical space)
  • leaf axil (PO:0009023) not a new term
  • branch axil (PO#)
  • bract axil (PO#) (children of axil).
  • reproductive shoot system (PO:0025082): A shoot system in the sporophytic phase that has as part at least one sporangium.
  • gynoecium ridge (PO:0025088): A gynoecium in the early stages of development, characterized as a ridge on the abaxial surface of the floral meristem that develops from a gynoecium primordium.
  • dehiscence zone (PO:0025092): A portion of plant tissue that is part of a plant structure and consists of a narrow band of cells that undergoes dehiscence upon maturation of the structure.
  • primordium (PO:0025127)
  • phyllome primordium
  • root parenchyma (PO:0025095): A portion of parenchyma tissue that is part of a root system.
  • stele
  • shoot axis stele
  • branch stele
  • stem stele
  • sporangium (already there, but didn’t have definition),
  • microsporangium
  • megasporangium
  • pericarp vascular bundle
  • shoot system vascular system. Made different vascular systems of above ground parts child of this.
  • phyllome vascular system
  • sepal vascular system
  • flower vascular system
  • tepal vascular system new

New terms- cells

  • antheridium sperm cell (PO:0025120)
  • pollen sperm cell (PO:0025121)
  • archegonium egg cell (PO:0025122)
  • embryo sac egg cell (PO:0025123)
  • multicellular trichome branch cell (PO:0025163)
  • root epidermal cell (PO:0025164)
  • shoot epidermal cell (PO:0025165)
  • papilla cell (PO:0025166)
  • leaf papilla cell (PO:0025167)
  • stigma papilla cell (PO:0025168)
  • pollen tube cell (PO:0025195)
  • leaf pavement cell (PO:0025212)
  • leaf abaxial pavement cell (PO:0025213)
  • leaf adaxial pavement cell (PO:0025214)
  • phyllome guard cell (PO:0025236)
  • leaf guard cell (PO:0025237)

List of new terms: trichome, epidermis, and related

carpel epidermis PO:0025096

stamen epidermis PO:0025097

bract trichome PO:0025098

cigar leaf lamina abaxial epidermis PO:0025135

peduncle epidermis PO:0025152

peduncle trichome PO:0025153

phyllome epidermis PO:0025157

bract epidermis PO:0025158

bract abaxial epidermis PO:0025159

bract adaxial epidermis PO:0025160

multicellular trichome PO:0025162

multicellular trichome branch cell PO:0025163

root epidermal cell PO:0025164

shoot epidermal cell PO:0025165

papilla cell PO:0025166

leaf papilla cell PO:0025167

stigma papilla cell PO:0025168

prickle PO:0025169

root prickle PO:0025170

shoot axis prickle PO:0025171

thorn PO:0025172

leaf spine PO:0025173

stipule spine PO:0025174

leaf prickle PO:0025175

stem trichome PO:0025176

branch trichome PO:0025177

stem epidermis PO:0025178

branch epidermis PO:0025179

sepal trichome PO:0025182

tepal epidermis PO:0025184

phyllome trichome PO:0025186

petal trichome PO:0025187

tepal trichome PO:0025188

tepal abaxial epidermis PO:0025192

tepal adaxial epidermis PO:0025193

carpel trichome PO:0025208

stamen trichome PO:0025209

leaf abaxial trichome PO:0025210

leaf adaxial trichome PO:0025211

leaf pavement cell PO:0025212

leaf abaxial pavement cell PO:0025213

leaf adaxial pavement cell PO:0025214

new terms- elongation and differentiation zones:

  • plant axis differentiation zone (PO:0025119)
  • differentiation zone (PO:0020135) was renamed root differentiation zone. Existing children lateral root differentiation zone (PO:0003016) and primary root differentiation zone (PO:0003015) remained, but got standardized definitions
  • shoot internode differentiation zone (PO:0025102)
  • branch internode differentiation zone (PO:0025103)
  • old term "stem internode differentiation zone" (PO:0008042) remained, but got standardized definition
  • plant axis elongation zone (PO:0025180)
  • root elongation zone (PO:0025181). Old term elongation zone (PO:0025181) was made obsolete, because definition of was incorrect.
  • lateral root elongation zone (PO:0025256) Old term lateral root elongation zone (PO:0003014) was made obsolete, because definition of was incorrect.
  • primary root elongation zone (PO:0025257) Old term primary root elongation zone (PO:0003003) was made obsolete, because definition of was incorrect.
  • shoot internode elongation zone (PO:0025100)
  • branch internode elongation zone (PO:0025101)
  • old term "stem internode elongation zone" (PO:0008041) remained, but got standardized definition

List of Terms stomatal complex:

  • stomatal complex
  • phyllome stomatal complex
  • leaf stomatal complex
  • petiole stomatal complex
  • leaf lamina stomatal complex
  • leaf lamina abaxial stomatal complex
  • leaf lamina adaxial stomatal complex
  • petiole abaxial stomatal complex
  • petiole adaxial stomatal complex
  • root nodule meristem (PO:0025194): A root meristem that gives rise to a root nodule.
  • basal endosperm transfer layer (PO:0025196) (replaces PO:0009019, with same name): A portion of plant tissue that is part of an endosperm and is composed of basal endosperm transfer cells. [source:POC:rw]

List of Renamed Terms

  • secretory trichome was renamed glandular trichome
  • seed trichome was made the primary name for PO:0004511, (changed seed hair to exact synonym, added pubescence as related synonym)
  • root differentiation zone (PO:0020135; renaming of old term differentiation zone)
  • valve (PO:0000033) was renaned fruit valve, with updated definition and new parent valve (PO:0025228).
  • hull (PO:0006000) was renamed Poaceae hull to distinguish it from other types of hulls
  • old microsporangium (PO:0009070) was renamed pollen sac and made a child of new microsporangium (PO:0025202)

List of replacement terms

These terms were made obsolete and replaced by new terms with the same name but new definitions, because the old definitions were incorrect:

elongation zone (PO:0020125) replaced by root elongation zone (PO:0025181)

obsolete lateral root elongation zone (PO:0003014) replaced by lateral root elongation zone (PO:0025256)

obsolete primary root elongation zone (PO:0003003) replaced by primary root elongation zone (PO:0025257)

obsolete basal endosperm transfer layer (PO:0009019) replaced by basal endosperm transfer layer (PO:0025196)

List of new terms in numerical order

id: PO:0025086 name: Poaceae gynoecium ridge

id: PO:0025087 name: Zea gynoecium ridge

id: PO:0025088 name: gynoecium ridge

id: PO:0025092 name: dehiscence zone

id: PO:0025093 name: moss capsule annulus

id: PO:0025094 name: sporangium

id: PO:0025095 name: root parenchyma

id: PO:0025096 name: carpel epidermis

id: PO:0025097 name: stamen epidermis

id: PO:0025098 name: bract trichome

id: PO:0025099 name: embryonic plant structure

id: PO:0025100 name: shoot internode elongation zone

id: PO:0025101 name: branch internode elongation zone

id: PO:0025102 name: shoot internode differentiation zone

id: PO:0025103 name: branch internode differentiation zone

id: PO:0025104 name: first order inflorescence axis

id: PO:0025105 name: forth order inflorescence axis

id: PO:0025106 name: fifth order inflorescence axis

id: PO:0025107 name: sixth order inflorescence axis

id: PO:0025108 name: seventh order inflorescence axis

id: PO:0025109 name: eighth order inflorescence axis

id: PO:0025110 name: ninth order inflorescence axis

id: PO:0025111 name: tenth or higher order inflorescence axis

id: PO:0025112 name: second order infructescence axis

id: PO:0025113 name: third order infructescence axis

id: PO:0025114 name: forth order infructescence axis

id: PO:0025115 name: fifth order infructescence axis

id: PO:0025116 name: sixth order infructescence axis

id: PO:0025117 name: plant anatomical space

id: PO:0025118 name: anther pore

id: PO:0025119 name: plant axis differentiation zone

id: PO:0025120 name: antheridium sperm cell

id: PO:0025121 name: pollen sperm cell

id: PO:0025122 name: archegonium egg cell

id: PO:0025123 name: embryo sac egg cell

id: PO:0025124 name: gametangium

id: PO:0025125 name: antheridium

id: PO:0025126 name: archegonium

id: PO:0025127 name: primordium

id: PO:0025128 name: phyllome primordium

id: PO:0025129 name: petiole lamina

id: PO:0025130 name: cigar leaf

id: PO:0025131 name: plant anatomical entity

id: PO:0025132 name: canal

id: PO:0025133 name: petiole canal

id: PO:0025134 name: inflorescence branch crown

id: PO:0025135 name: cigar leaf lamina abaxial epidermis

id: PO:0025136 name: free tepal

id: PO:0025137 name: fused tepal

id: PO:0025138 name: fused collective tepal structure

id: PO:0025139 name: phyllome apex

id: PO:0025140 name: phyllome base

id: PO:0025141 name: phyllome tip

id: PO:0025142 name: leaf tip

id: PO:0025143 name: tepal apex

id: PO:0025144 name: petal apex

id: PO:0025145 name: sepal apex

id: PO:0025146 name: petal base

id: PO:0025147 name: sepal base

id: PO:0025148 name: tepal base

id: PO:0025149 name: petal tip

id: PO:0025150 name: sepal tip

id: PO:0025151 name: tepal tip

id: PO:0025152 name: peduncle epidermis

id: PO:0025153 name: peduncle trichome

id: PO:0025154 name: bract apex

id: PO:0025155 name: bract base

id: PO:0025156 name: bract tip

id: PO:0025157 name: phyllome epidermis

id: PO:0025158 name: bract epidermis

id: PO:0025159 name: bract abaxial epidermis

id: PO:0025160 name: bract adaxial epidermis

id: PO:0025161 name: portion of plant substance

id: PO:0025162 name: multicellular trichome

id: PO:0025163 name: multicellular trichome branch cell

id: PO:0025164 name: root epidermal cell

id: PO:0025165 name: shoot epidermal cell

id: PO:0025166 name: papilla cell

id: PO:0025167 name: leaf papilla cell

id: PO:0025168 name: stigma papilla cell

id: PO:0025169 name: prickle

id: PO:0025170 name: root prickle

id: PO:0025171 name: shoot axis prickle

id: PO:0025172 name: thorn

id: PO:0025173 name: leaf spine

id: PO:0025174 name: stipule spine

id: PO:0025175 name: leaf prickle

id: PO:0025176 name: stem trichome

id: PO:0025177 name: branch trichome

id: PO:0025178 name: stem epidermis

id: PO:0025179 name: branch epidermis

id: PO:0025180 name: plant axis elongation zone

id: PO:0025181 name: root elongation zone

id: PO:0025182 name: sepal trichome

id: PO:0025183 name: leaf stomatal complex

id: PO:0025184 name: tepal epidermis

id: PO:0025185 name: leaf lamina stomatal complex

id: PO:0025186 name: phyllome trichome

id: PO:0025187 name: petal trichome

id: PO:0025188 name: tepal trichome

id: PO:0025189 name: petiole stomatal complex

id: PO:0025190 name: leaf abaxial stomatal complex

id: PO:0025191 name: leaf adaxial stomatal complex

id: PO:0025192 name: tepal abaxial epidermis

id: PO:0025193 name: tepal adaxial epidermis

id: PO:0025194 name: root nodule meristem

id: PO:0025195 name: pollen tube cell

id: PO:0025196 name: basal endosperm transfer layer

id: PO:0025197 name: stele

id: PO:0025198 name: shoot axis stele

id: PO:0025199 name: branch stele

id: PO:0025200 name: stem stele

id: PO:0025201 name: megasporangium

id: PO:0025202 name: microsporangium

id: PO:0025203 name: pericarp vascular bundle

id: PO:0025204 name: rhizome internode

id: PO:0025205 name: shoot system vascular system

id: PO:0025206 name: phyllome vascular system

id: PO:0025207 name: tepal vascular system

id: PO:0025208 name: carpel trichome

id: PO:0025209 name: stamen trichome

id: PO:0025210 name: leaf abaxial trichome

id: PO:0025211 name: leaf adaxial trichome

id: PO:0025212 name: leaf pavement cell

id: PO:0025213 name: leaf abaxial pavement cell

id: PO:0025214 name: leaf adaxial pavement cell

id: PO:0025215 name: phyllome stomatal complex

id: PO:0025216 name: bract stomatal complex

id: PO:0025217 name: carpel stomatal complex

id: PO:0025218 name: petal stomatal complex

id: PO:0025219 name: sepal stomatal complex

id: PO:0025220 name: stamen stomatal complex

id: PO:0025221 name: tepal stomatal complex

id: PO:0025222 name: reproductive shoot apex

id: PO:0025223 name: vegetative shoot apex

id: PO:0025224 name: axil

id: PO:0025225 name: bract axil

id: PO:0025226 name: branch axil

id: PO:0025227 name: tetrad of megaspores

id: PO:0025228 name: valve

id: PO:0025229 name: moss capsule valve

id: PO:0025230 name: columella

id: PO:0025231 name: moss capsule columella

id: PO:0025232 name: moss capsule

id: PO:0025233 name: embryonic plant tissue

id: PO:0025234 name: phyllome stomatal pore

id: PO:0025235 name: leaf stomatal pore

id: PO:0025236 name: phyllome guard cell

id: PO:0025237 name: leaf guard cell

id: PO:0025238 name: abaxial petiole canal

id: PO:0025239 name: adaxial petiole canal

id: PO:0025240 name: secondary inflorescence

id: PO:0025241 name: second order infructescence

id: PO:0025242 name: infructescence axis

id: PO:0025243 name: infructescence branch

id: PO:0025244 name: first order infructescence axis

id: PO:0025245 name: persistent sepal

id: PO:0025246 name: persistent tepal

id: PO:0025247 name: persistent stamen

id: PO:0025248 name: pseudostem

id: PO:0025249 name: leaf sheath epidermis

id: PO:0025250 name: leaf sheath abaxial epidermis

id: PO:0025251 name: leaf sheath adaxial epidermis

id: PO:0025252 name: seventh order infructescence axis

id: PO:0025253 name: eighth order infructescence axis

id: PO:0025254 name: ninth order infructescence axis

id: PO:0025255 name: tenth or higher order infructescence axis

id: PO:0025256 name: lateral root elongation zone

id: PO:0025257 name: primary root elongation zone

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