Difference between revisions of "Goal 1. Anatomical Entities"
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Back to [[Wood_anatomy_ontology_meeting,_2012_at_NYBG,_agenda]] | Back to [[Wood_anatomy_ontology_meeting,_2012_at_NYBG,_agenda]] | ||
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Do we need only wood-related terms, or other terms for woody plants? | Do we need only wood-related terms, or other terms for woody plants? | ||
| + | ==wood related term suggestions== | ||
reaction wood | reaction wood | ||
| + | |||
| + | ==other suggestions== | ||
=3. Work on definitions of new terms= | =3. Work on definitions of new terms= | ||
| + | |||
| + | ''space for notes as we work'' | ||
| + | |||
| + | link to Google doc | ||
Revision as of 18:11, 4 February 2012
Back to Wood_anatomy_ontology_meeting,_2012_at_NYBG,_agenda
1. Review existing anatomy/morphology terms and definitions
tracheary elements
- tracheary element (PO:0000290)
- tracheid (PO:0000301)
- vessel member (PO:0002003)
fiber cells
- sclerenchyma cell (PO:0000077) - parent term
- fiber cell (PO:0025407)
- phloem fiber cell (PO:0004519)
- xylem fiber cell (PO:0000274)
- libriform fiber cell (PO:0004520)
- fiber tracheid (PO:0000355)
- gelatious fiber cell (PO:0025422)
sieve elements (PO:0025406)
- sieve cell (PO:0025415)
- sieve tube member (PO:0000289)
New terms for GO
These subcellular components have been added to GO:
- GO:0097217 sieve area
- GO:0097218 sieve plate
- GO:0097219 compound sieve plate
- GO:0097220 simple sieve plate
- perforation plate (requested)
initial cells (PO:0004011)
- cambial initial
- fusiform initial (PO:0000079) (syn.: xylem initial, xylem mother cell)
- ray initial (PO:0000082)
- phloem mother cell (PO:0000400)
wood parenchyma cells (PO:0004525)
- axial wood parenchyma cell (PO:0004526)
- ray wood parenchyma cell(PO:0004527)
- procumbent ray wood parenchyma cell (PO:0004529)
- upright ray wood parenchyma cell (PO:0004528)
- sheath cell (PO:0004531)
- tile cell (PO:0004530)
- companion cell (PO:0000071)
- albuminous cell (PO:0025412)
portion of vascular tissue (PO:0009015)
xylem (PO:0005352)
- vessel (PO:0025417)
- primary xylem (PO:0005849)
- protoxylem (PO:0000272)
- metaxylem (PO:0000372)
- secondary xylem (PO:0005848)
- heartwood (PO:0004512)
- sapwood (PO:0004513)
- growth ring (PO:0004514)
- early wood (PO:0004515)
- late wood (PO:0004516)
- growth ring boundary (PO:0004517)
phloem (PO:0005417)
- sieve tube (PO:0025416)
- primary phloem (PO:0006075)
- protophloem (PO:0006077)
- metaphloem (PO:0006076)
- internal phloem (PO:0006216)
- secondary phloem (PO:0005043)
- included phloem (PO:0004524)
wood parenchyma (PO:0004532)
- axial wood parenchyma (PO:0004533)
- ray wood parenchyma (PO:0004534)
lateral meristem (PO:0020145)
- cambium (PO:0005597)
- cork cambium (PO:0005599)
- vascular cambium (PO:0005598)
systems
- vascular system (PO:0000034) is_a plant structure
- axial system (PO:0025410)
- ray system (PO:0025411)
2. Develop list of anatomy/morphology terms that are missing
Do we need only wood-related terms, or other terms for woody plants?
reaction wood
other suggestions
3. Work on definitions of new terms
space for notes as we work
link to Google doc
