Difference between revisions of "Goal 1. Anatomical Entities"

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*secondary phloem (PO:0005043)
 
*secondary phloem (PO:0005043)
 
*included phloem (PO:0004524)
 
*included phloem (PO:0004524)
 
===systems===
 
*vascular system (PO:0000034)
 
*axial system (PO:0025410)
 
*ray system (PO:0025411)
 
  
 
===wood parenchyma (PO:0004532)===
 
===wood parenchyma (PO:0004532)===
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*cork cambium (PO:0005599)
 
*cork cambium (PO:0005599)
 
*vascular cambium (PO:0005598)
 
*vascular cambium (PO:0005598)
 +
 +
===systems===
 +
*vascular system (PO:0000034) is_a plant structure
 +
*axial system (PO:0025410)
 +
*ray system (PO:0025411)
  
 
=2. Develop list of anatomy/morphology terms that are missing=
 
=2. Develop list of anatomy/morphology terms that are missing=

Revision as of 23:24, 3 February 2012

This page is under construction.

Back to Wood_anatomy_ontology_meeting,_2012_at_NYBG,_agenda

1. Review existing anatomy/morphology terms and definitions

Cell types related to wood

tracheary elements

  • tracheary element (PO:0000290)
  • tracheid (PO:0000301)
  • vessel member (PO:0002003)

fiber cells

  • sclerenchyma cell (PO:0000077) - parent term
  • fiber cell (PO:0025407)
  • phloem fiber cell (PO:0004519)
  • xylem fiber cell (PO:0000274)
  • libriform fiber cell (PO:0004520)
  • fiber tracheid (PO:0000355)
  • gelatious fiber cell (PO:0025422)

sieve elements (PO:0025406)

  • sieve cell (PO:0025415)
  • sieve tube member (PO:0000289)

New terms for GO

These subcellular components have been added to GO:

  • GO:0097217 sieve area
  • GO:0097218 sieve plate
  • GO:0097219 compound sieve plate
  • GO:0097220 simple sieve plate
  • perforation plate (requested)

initial cells (PO:0004011)

  • cambial initial
  • fusiform initial (PO:0000079) (syn.: xylem initial, xylem mother cell)
  • ray initial (PO:0000082)
  • phloem mother cell (PO:0000400)

wood parenchyma cells (PO:0004525)

  • axial wood parenchyma cell (PO:0004526)
  • ray wood parenchyma cell(PO:0004527)
  • procumbent ray wood parenchyma cell (PO:0004529)
  • upright ray wood parenchyma cell (PO:0004528)
  • sheath cell (PO:0004531)
  • tile cell (PO:0004530)
  • companion cell (PO:0000071)
  • albuminous cell (PO:0025412)

Tissue types related to wood

portion of vascular tissue (PO:0009015)

xylem (PO:0005352)

  • vessel (PO:0025417)
  • primary xylem (PO:0005849)
  • protoxylem (PO:0000272)
  • metaxylem (PO:0000372)
  • secondary xylem (PO:0005848)
  • growth ring (PO:0004514)
  • heartwood (PO:0004512)
  • sapwood (PO:0004513)

phloem (PO:0005417)

  • sieve tube (PO:0025416)
  • primary phloem (PO:0006075)
  • protophloem (PO:0006077)
  • metaphloem (PO:0006076)
  • internal phloem (PO:0006216)
  • secondary phloem (PO:0005043)
  • included phloem (PO:0004524)

wood parenchyma (PO:0004532)

  • axial wood parenchyma (PO:0004533)
  • ray wood parenchyma (PO:0004534)

lateral meristem (PO:0020145)

  • cambium (PO:0005597)
  • cork cambium (PO:0005599)
  • vascular cambium (PO:0005598)

systems

  • vascular system (PO:0000034) is_a plant structure
  • axial system (PO:0025410)
  • ray system (PO:0025411)

2. Develop list of anatomy/morphology terms that are missing

Do we need only wood-related terms, or other terms for woody plants?

3. Work on definitions of new terms