Difference between revisions of "New terms and obsolete terms for Jan2011 release"
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==List of Obsoleted Terms== | ==List of Obsoleted Terms== | ||
| − | * pollen tube (PO:0006345) [http://www.plantontology.org/amigo/go.cgi?session_id=5689b1294171797&view=assoc&search_constraint=terms&query=PO:0006345&page=94 97 pages of annotations: 4864 ''Arabidopsis'' and 1 each from S.tuberosum and rice]. Consider pollen tube cell (PO:0025195). New term pollen tube | + | * pollen tube (PO:0006345) [http://www.plantontology.org/amigo/go.cgi?session_id=5689b1294171797&view=assoc&search_constraint=terms&query=PO:0006345&page=94 97 pages of annotations: 4864 ''Arabidopsis'' and 1 each from S.tuberosum and rice]. Consider pollen tube cell (PO:0025195). New term pollen tube was requested in GO; GO ID (GO:0090406) has been added to the obsoleted term. |
| − | * pollen tube tip (PO:0000028) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=8476b1294171984&view=assoc&query=PO%3A0000028&search_constraint=terms 9 annotations from ''Arabidopsis'']. Consider pollen tube cell (PO:0025195). New term pollen tube tip | + | * pollen tube tip (PO:0000028) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=8476b1294171984&view=assoc&query=PO%3A0000028&search_constraint=terms 9 annotations from ''Arabidopsis'']. Consider pollen tube cell (PO:0025195). New term pollen tube tip was requested in GO; GO ID (GO:0090404) has been added to the obsoleted term. |
* root hair tip (PO:0000029) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=4940b1294172538&view=assoc&query=PO%3A0000029&search_constraint=terms 1 annotation from ''Arabidopsis'']. Consider root hair cell (PO:0000256), or root hair tip (GO:0035619). | * root hair tip (PO:0000029) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=4940b1294172538&view=assoc&query=PO%3A0000029&search_constraint=terms 1 annotation from ''Arabidopsis'']. Consider root hair cell (PO:0000256), or root hair tip (GO:0035619). | ||
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* plant anatomical entity (PO:0025131): An anatomical entity (CARO:0000000) that is or was part of a plant. | * plant anatomical entity (PO:0025131): An anatomical entity (CARO:0000000) that is or was part of a plant. | ||
* plant anatomical space (PO:0025117): An anatomical space (CARO:0000005) that is part of a plant. | * plant anatomical space (PO:0025117): An anatomical space (CARO:0000005) that is part of a plant. | ||
| + | * portion of plant substance (PO:0025161) | ||
| + | |||
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* shoot system vascular system PO:0025205 - Made different vascular systems of above ground parts child of this. | * shoot system vascular system PO:0025205 - Made different vascular systems of above ground parts child of this. | ||
* phyllome vascular system PO:0025206 | * phyllome vascular system PO:0025206 | ||
| − | * tepal vascular system | + | * tepal vascular system PO:0025207 |
| − | |||
* reproductive shoot apex PO:0025222 | * reproductive shoot apex PO:0025222 | ||
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* plant axis elongation zone (PO:0025180) | * plant axis elongation zone (PO:0025180) | ||
| − | * root elongation zone (PO:0025181). Old term elongation zone (PO: | + | * root elongation zone (PO:0025181). Old term elongation zone (PO:0020125) was made obsolete, because definition of was incorrect. |
* lateral root elongation zone (PO:0025256) Old term lateral root elongation zone (PO:0003014) was made obsolete, because definition of was incorrect. | * lateral root elongation zone (PO:0025256) Old term lateral root elongation zone (PO:0003014) was made obsolete, because definition of was incorrect. | ||
* primary root elongation zone (PO:0025257) Old term primary root elongation zone (PO:0003003) was made obsolete, because definition of was incorrect. | * primary root elongation zone (PO:0025257) Old term primary root elongation zone (PO:0003003) was made obsolete, because definition of was incorrect. | ||
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id: PO:0025240 | id: PO:0025240 | ||
| − | name: | + | name: second order inflorescence |
id: PO:0025241 | id: PO:0025241 | ||
Latest revision as of 17:34, 24 January 2011
Back to Jan 2011 Release Page
Back to Summary of Changes to PO Jan2011
List of Obsoleted Terms
- pollen tube (PO:0006345) 97 pages of annotations: 4864 Arabidopsis and 1 each from S.tuberosum and rice. Consider pollen tube cell (PO:0025195). New term pollen tube was requested in GO; GO ID (GO:0090406) has been added to the obsoleted term.
- pollen tube tip (PO:0000028) 9 annotations from Arabidopsis. Consider pollen tube cell (PO:0025195). New term pollen tube tip was requested in GO; GO ID (GO:0090404) has been added to the obsoleted term.
- root hair tip (PO:0000029) 1 annotation from Arabidopsis. Consider root hair cell (PO:0000256), or root hair tip (GO:0035619).
- floral epidermis (PO:0008043) 1 annotation from Arabidopsis. Consider carpel epidermis (PO:0025096), petal epidermis (PO:0006041), sepal epidermis (PO:0006040), stamen epidermis (PO:0025097), or tepal epidermis (PO:0025184)
- papillae (PO:0002001) 6 annotations from Arabidopsis. Consider: papilla cell (PO:0025166), leaf papilla cell (PO:0025167), stigma papilla cell ( PO:0025168) or plant cell papilla (GO:0090395), leaf papilla (GO:0090396) or stigma papilla
- primary root elongation zone (PO:0003003) 49 annotations from Arabidopsis, 1 from Oryza. Replaced by new term primary root elongation zone (PO:0025257).
- lateral root elongation zone (PO:0003014) 4 annotations from Arabidopsis. Replaced by new term lateral root elongation zone (PO:0025256).
Others: No Annotations associated with them:
- basal endosperm transfer layer (PO:0009019) (created new term with same name, but new def'n and id). No annotations
- trichome branch (PO:0008031). replaced by 'multicellular trichome branch cell (PO:0025163)' in PO, plus unicellular trichome branch in GO- waiting for ID#): No Annotations
- floral stomatal complex (PO:0008044): no annotations
- floral guard cell (PO:0008045): no annotations
- floral stomatal pore (PO:0008046): no annotations
List of Renamed Terms
- root hair (PO:0000256) ~100 annotations from Arabidopsis, maize, rice and S.lycopersicum. The name was changed to 'root hair cel'l (PO:0000256), because the definition of the term was for a cell, not just for the hair. Annotations that belong only to the cell extension should be moved to root hair (GO:0035618) or root hair tip (GO:0035619).
- differentiation zone (PO:0020135)- Renamed 'root differentiation zone', (PO:0020135), 6 annotations from Arabidopsis. These should not need to be moved.
- elongation zone (PO:0020125) 36 annotations from Arabidopsis, 1 from rice Replaced by root elongation zone (PO:0025181).
- secretory trichome (PO:0004509) was renamed glandular trichome (PO:0004509)
- seed hair (PO:0004511) was renamed 'seed trichome' (formerly a synonym), made 'seed hair' an exact synonym, added 'pubescence' as related synonym.
- valve (PO:0000033) was renamed fruit valve, with updated definition and new parent valve (PO:0025228).
- hull (PO:0006000) was renamed Poaceae hull to distinguish it from other types of hulls 11 annotations from Oryza gene and QTL
- old microsporangium (PO:0009070) was renamed pollen sac and made a child of new microsporangium (PO:0025202)
List of replacement terms
These terms were made obsolete and replaced by new terms with the same name but new definitions, because the old definitions were incorrect:
- elongation zone (PO:0020125) replaced by root elongation zone (PO:0025181)
- obsolete lateral root elongation zone (PO:0003014) replaced by lateral root elongation zone (PO:0025256)
- obsolete primary root elongation zone (PO:0003003) replaced by primary root elongation zone (PO:0025257)
- obsolete basal endosperm transfer layer (PO:0009019) replaced by basal endosperm transfer layer (PO:0025196)
List of New Terms-general:
- plant anatomical entity (PO:0025131): An anatomical entity (CARO:0000000) that is or was part of a plant.
- plant anatomical space (PO:0025117): An anatomical space (CARO:0000005) that is part of a plant.
- portion of plant substance (PO:0025161)
- embryonic plant structure PO:0025099
- axil id: PO:0025224
- branch axil PO:0025226
- bract axil PO:0025225
- reproductive shoot system PO:0025082
- gynoecium ridge PO:0025088
- Poaceae gynoecium ridge PO:0025086
- Zea gynoecium ridge PO:0025087
- dehiscence zone PO:0025092
- primordium PO:0025127
- phyllome primordium PO:0025128
- root parenchyma PO:0025095
- stele PO:0025197
- shoot axis stele PO:0025198
- branch stele PO:0025199
- stem stele PO:0025200
- sporangium PO:0025094 (added during last release, but didn’t have definition),
- microsporangium PO:0025202
- megasporangium PO:0025201
- gametangium PO:0025124
- antheridium PO:0025125
- archegonium PO:0025126
- pericarp vascular bundle PO:0025203
- shoot system vascular system PO:0025205 - Made different vascular systems of above ground parts child of this.
- phyllome vascular system PO:0025206
- tepal vascular system PO:0025207
- reproductive shoot apex PO:0025222
- vegetative shoot apex PO:0025223
- columella PO:0025230
- moss capsule columella PO:0025231
- PO:0004540 was renamed fruit columella
- canal PO:0025132
- petiole canal PO:0025133
- abaxial petiole canal PO:0025238
- adaxial petiole canal PO:0025239
- phyllome apex PO:0025139
- phyllome base PO:0025140
- phyllome tip PO:0025141
- valve PO:0025228
- moss capsule valve PO:0025229
- PO:0000033 was renamed fruit valve
New terms- cells
- antheridium sperm cell (PO:0025120)
- pollen sperm cell (PO:0025121)
- archegonium egg cell (PO:0025122)
- embryo sac egg cell (PO:0025123)
- multicellular trichome branch cell (PO:0025163)
- root epidermal cell (PO:0025164)
- shoot epidermal cell (PO:0025165)
- papilla cell (PO:0025166)
- leaf papilla cell (PO:0025167)
- stigma papilla cell (PO:0025168)
- pollen tube cell (PO:0025195)
- leaf pavement cell (PO:0025212)
- leaf abaxial pavement cell (PO:0025213)
- leaf adaxial pavement cell (PO:0025214)
- phyllome guard cell (PO:0025236)
- leaf guard cell (PO:0025237)
carpel epidermis PO:0025096
stamen epidermis PO:0025097
bract trichome PO:0025098
cigar leaf lamina abaxial epidermis PO:0025135
peduncle epidermis PO:0025152
peduncle trichome PO:0025153
phyllome epidermis PO:0025157
bract epidermis PO:0025158
bract abaxial epidermis PO:0025159
bract adaxial epidermis PO:0025160
multicellular trichome PO:0025162
multicellular trichome branch cell PO:0025163
root epidermal cell PO:0025164
shoot epidermal cell PO:0025165
papilla cell PO:0025166
leaf papilla cell PO:0025167
stigma papilla cell PO:0025168
prickle PO:0025169
root prickle PO:0025170
shoot axis prickle PO:0025171
thorn PO:0025172
leaf spine PO:0025173
stipule spine PO:0025174
leaf prickle PO:0025175
stem trichome PO:0025176
branch trichome PO:0025177
stem epidermis PO:0025178
branch epidermis PO:0025179
sepal trichome PO:0025182
tepal epidermis PO:0025184
phyllome trichome PO:0025186
petal trichome PO:0025187
tepal trichome PO:0025188
tepal abaxial epidermis PO:0025192
tepal adaxial epidermis PO:0025193
carpel trichome PO:0025208
stamen trichome PO:0025209
leaf abaxial trichome PO:0025210
leaf adaxial trichome PO:0025211
leaf pavement cell PO:0025212
leaf abaxial pavement cell PO:0025213
leaf adaxial pavement cell PO:0025214
new terms- elongation and differentiation zones:
- plant axis differentiation zone (PO:0025119)
- differentiation zone (PO:0020135) was renamed root differentiation zone. Existing children lateral root differentiation zone (PO:0003016) and primary root differentiation zone (PO:0003015) remained, but got standardized definitions
- shoot internode differentiation zone (PO:0025102)
- branch internode differentiation zone (PO:0025103)
- old term "stem internode differentiation zone" (PO:0008042) remained, but got standardized definition
- plant axis elongation zone (PO:0025180)
- root elongation zone (PO:0025181). Old term elongation zone (PO:0020125) was made obsolete, because definition of was incorrect.
- lateral root elongation zone (PO:0025256) Old term lateral root elongation zone (PO:0003014) was made obsolete, because definition of was incorrect.
- primary root elongation zone (PO:0025257) Old term primary root elongation zone (PO:0003003) was made obsolete, because definition of was incorrect.
- shoot internode elongation zone (PO:0025100)
- branch internode elongation zone (PO:0025101)
- old term "stem internode elongation zone" (PO:0008041) remained, but got standardized definition
List of Terms stomatal complex:
phyllome stomatal complex PO:0025215
leaf stomatal complex PO:0025183
leaf lamina stomatal complex PO:0025185
petiole stomatal complex PO:0025189
leaf abaxial stomatal complex PO:0025190
leaf adaxial stomatal complex PO:0025191
bract stomatal complex PO:0025216
carpel stomatal complex PO:0025217
petal stomatal complex PO:0025218
sepal stomatal complex PO:0025219
stamen stomatal complex PO:0025220
tepal stomatal complex PO:0025221
plus:
phyllome stomatal pore PO:0025234
leaf stomatal pore PO:0025235
List of new terms in numerical order
id: PO:0025086 name: Poaceae gynoecium ridge
id: PO:0025087 name: Zea gynoecium ridge
id: PO:0025088 name: gynoecium ridge
id: PO:0025092 name: dehiscence zone
id: PO:0025093 name: moss capsule annulus
id: PO:0025094 name: sporangium
id: PO:0025095 name: root parenchyma
id: PO:0025096 name: carpel epidermis
id: PO:0025097 name: stamen epidermis
id: PO:0025098 name: bract trichome
id: PO:0025099 name: embryonic plant structure
id: PO:0025100 name: shoot internode elongation zone
id: PO:0025101 name: branch internode elongation zone
id: PO:0025102 name: shoot internode differentiation zone
id: PO:0025103 name: branch internode differentiation zone
id: PO:0025104 name: first order inflorescence axis
id: PO:0025105 name: forth order inflorescence axis
id: PO:0025106 name: fifth order inflorescence axis
id: PO:0025107 name: sixth order inflorescence axis
id: PO:0025108 name: seventh order inflorescence axis
id: PO:0025109 name: eighth order inflorescence axis
id: PO:0025110 name: ninth order inflorescence axis
id: PO:0025111 name: tenth or higher order inflorescence axis
id: PO:0025112 name: second order infructescence axis
id: PO:0025113 name: third order infructescence axis
id: PO:0025114 name: forth order infructescence axis
id: PO:0025115 name: fifth order infructescence axis
id: PO:0025116 name: sixth order infructescence axis
id: PO:0025117 name: plant anatomical space
id: PO:0025118 name: anther pore
id: PO:0025119 name: plant axis differentiation zone
id: PO:0025120 name: antheridium sperm cell
id: PO:0025121 name: pollen sperm cell
id: PO:0025122 name: archegonium egg cell
id: PO:0025123 name: embryo sac egg cell
id: PO:0025124 name: gametangium
id: PO:0025125 name: antheridium
id: PO:0025126 name: archegonium
id: PO:0025127 name: primordium
id: PO:0025128 name: phyllome primordium
id: PO:0025129 name: petiole lamina
id: PO:0025130 name: cigar leaf
id: PO:0025131 name: plant anatomical entity
id: PO:0025132 name: canal
id: PO:0025133 name: petiole canal
id: PO:0025134 name: inflorescence branch crown
id: PO:0025135 name: cigar leaf lamina abaxial epidermis
id: PO:0025136 name: free tepal
id: PO:0025137 name: fused tepal
id: PO:0025138 name: fused collective tepal structure
id: PO:0025139 name: phyllome apex
id: PO:0025140 name: phyllome base
id: PO:0025141 name: phyllome tip
id: PO:0025142 name: leaf tip
id: PO:0025143 name: tepal apex
id: PO:0025144 name: petal apex
id: PO:0025145 name: sepal apex
id: PO:0025146 name: petal base
id: PO:0025147 name: sepal base
id: PO:0025148 name: tepal base
id: PO:0025149 name: petal tip
id: PO:0025150 name: sepal tip
id: PO:0025151 name: tepal tip
id: PO:0025152 name: peduncle epidermis
id: PO:0025153 name: peduncle trichome
id: PO:0025154 name: bract apex
id: PO:0025155 name: bract base
id: PO:0025156 name: bract tip
id: PO:0025157 name: phyllome epidermis
id: PO:0025158 name: bract epidermis
id: PO:0025159 name: bract abaxial epidermis
id: PO:0025160 name: bract adaxial epidermis
id: PO:0025161 name: portion of plant substance
id: PO:0025162 name: multicellular trichome
id: PO:0025163 name: multicellular trichome branch cell
id: PO:0025164 name: root epidermal cell
id: PO:0025165 name: shoot epidermal cell
id: PO:0025166 name: papilla cell
id: PO:0025167 name: leaf papilla cell
id: PO:0025168 name: stigma papilla cell
id: PO:0025169 name: prickle
id: PO:0025170 name: root prickle
id: PO:0025171 name: shoot axis prickle
id: PO:0025172 name: thorn
id: PO:0025173 name: leaf spine
id: PO:0025174 name: stipule spine
id: PO:0025175 name: leaf prickle
id: PO:0025176 name: stem trichome
id: PO:0025177 name: branch trichome
id: PO:0025178 name: stem epidermis
id: PO:0025179 name: branch epidermis
id: PO:0025180 name: plant axis elongation zone
id: PO:0025181 name: root elongation zone
id: PO:0025182 name: sepal trichome
id: PO:0025183 name: leaf stomatal complex
id: PO:0025184 name: tepal epidermis
id: PO:0025185 name: leaf lamina stomatal complex
id: PO:0025186 name: phyllome trichome
id: PO:0025187 name: petal trichome
id: PO:0025188 name: tepal trichome
id: PO:0025189 name: petiole stomatal complex
id: PO:0025190 name: leaf abaxial stomatal complex
id: PO:0025191 name: leaf adaxial stomatal complex
id: PO:0025192 name: tepal abaxial epidermis
id: PO:0025193 name: tepal adaxial epidermis
id: PO:0025194 name: root nodule meristem
id: PO:0025195 name: pollen tube cell
id: PO:0025196 name: basal endosperm transfer layer
id: PO:0025197 name: stele
id: PO:0025198 name: shoot axis stele
id: PO:0025199 name: branch stele
id: PO:0025200 name: stem stele
id: PO:0025201 name: megasporangium
id: PO:0025202 name: microsporangium
id: PO:0025203 name: pericarp vascular bundle
id: PO:0025204 name: rhizome internode
id: PO:0025205 name: shoot system vascular system
id: PO:0025206 name: phyllome vascular system
id: PO:0025207 name: tepal vascular system
id: PO:0025208 name: carpel trichome
id: PO:0025209 name: stamen trichome
id: PO:0025210 name: leaf abaxial trichome
id: PO:0025211 name: leaf adaxial trichome
id: PO:0025212 name: leaf pavement cell
id: PO:0025213 name: leaf abaxial pavement cell
id: PO:0025214 name: leaf adaxial pavement cell
id: PO:0025215 name: phyllome stomatal complex
id: PO:0025216 name: bract stomatal complex
id: PO:0025217 name: carpel stomatal complex
id: PO:0025218 name: petal stomatal complex
id: PO:0025219 name: sepal stomatal complex
id: PO:0025220 name: stamen stomatal complex
id: PO:0025221 name: tepal stomatal complex
id: PO:0025222 name: reproductive shoot apex
id: PO:0025223 name: vegetative shoot apex
id: PO:0025224 name: axil
id: PO:0025225 name: bract axil
id: PO:0025226 name: branch axil
id: PO:0025227 name: tetrad of megaspores
id: PO:0025228 name: valve
id: PO:0025229 name: moss capsule valve
id: PO:0025230 name: columella
id: PO:0025231 name: moss capsule columella
id: PO:0025232 name: moss capsule
id: PO:0025233 name: embryonic plant tissue
id: PO:0025234 name: phyllome stomatal pore
id: PO:0025235 name: leaf stomatal pore
id: PO:0025236 name: phyllome guard cell
id: PO:0025237 name: leaf guard cell
id: PO:0025238 name: abaxial petiole canal
id: PO:0025239 name: adaxial petiole canal
id: PO:0025240 name: second order inflorescence
id: PO:0025241 name: second order infructescence
id: PO:0025242 name: infructescence axis
id: PO:0025243 name: infructescence branch
id: PO:0025244 name: first order infructescence axis
id: PO:0025245 name: persistent sepal
id: PO:0025246 name: persistent tepal
id: PO:0025247 name: persistent stamen
id: PO:0025248 name: pseudostem
id: PO:0025249 name: leaf sheath epidermis
id: PO:0025250 name: leaf sheath abaxial epidermis
id: PO:0025251 name: leaf sheath adaxial epidermis
id: PO:0025252 name: seventh order infructescence axis
id: PO:0025253 name: eighth order infructescence axis
id: PO:0025254 name: ninth order infructescence axis
id: PO:0025255 name: tenth or higher order infructescence axis
id: PO:0025256 name: lateral root elongation zone
id: PO:0025257 name: primary root elongation zone
