Difference between revisions of "Summary of Changes to PO July 2012"

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Back to [[July 2012 Release]] page.
 
Back to [[July 2012 Release]] page.
  
 +
=Updated definitions and/or comments: PAE terms=
 +
areole bud (PO:0025353)
  
−
Updated definition of areole bud (PO:0025353), phyllome lamina areole (PO:0025391), leaf lamina areole (PO:0025392), leaf lamina vein (PO:0020138), axillary vegetative bud (PO:0004712), terminal vegetative bud (PO:0004716)
+
phyllome lamina areole (PO:0025391)
 +
 
 +
leaf lamina areole (PO:0025392)
 +
 
 +
leaf lamina vein (PO:0020138)
 +
 
 +
axillary vegetative bud (PO:0004712)
 +
 
 +
terminal vegetative bud (PO:0004716)
 +
 
 +
tuber (PO:0004543) (definition and comment)
 +
 
 +
subterranean tuber (PO:0004547) (comment)
 +
 
 +
phyllome marginal meristem (definitions and comments)
 +
 
 +
leaf marginal meristem (definitions and comments)
 +
 
 +
shoot apex  (changed definition to: "has as parts ...the youngest phyllome primordia" instead of "...leaf primordia")
 +
 
 +
leaf sheath auricle
 +
 
 +
phyllome primordium (*updated definitions: part_of shoot apex)
 +
 
 +
cotyledon primordium (*updated definitions: part_of vegetative shoot apex)
 +
 
 +
vascular leaf primordium (*updated definitions: part_of vegetative shoot apex)
 +
 
 +
bract primordium (*updated definitions: part_of reproductive shoot apex) *relations were already there.
 +
 
 +
floral structure primordium (added "is part-of a reproductive shoot apex (PO:0025222)" to definition) Removed redundant relations from its subtypes.
 +
 
 +
plant organ (Modified comment)
 +
 
 +
ovule (PO:0020003) (modified def'n: use located in rather than contains)
 +
 
 +
gynoecium
 +
 
 +
androecium
 +
 
 +
subterranean tuber interfascicular region (comment)
 +
 
 +
lateral root
 +
 
 +
root primordium
 +
 
 +
lateral root primordium
 +
 
 +
root anlagen (comment)
 +
 
 +
whole plant (removed example seed example in comment)
 +
 
 +
phyllome anlagen (added "part_of peripheral zone (PO:0000225)" to definition of, relation was already there)
 +
 
 +
 
 +
antiraphe, chalaza, integument, nucellus, raphe, funicle (Added comment and added PO ids to their definitions)
 +
 
 +
 
 +
 
 +
 
 +
* Updated definition of primordium and its subtypes:
 +
primordium (PO:0025127)
 +
 
 +
androecium primordium
 +
 
 +
anther primordium
 +
 
 +
carpel primordium
 +
 
 +
cotyldeon primordium
 +
 
 +
gynoecium primordium
 +
 
 +
lateral root primordium
 +
 
 +
lodicule primordium
 +
 
 +
ovule primordium
 +
 
 +
petal primordium
 +
 
 +
phyllome primordium
 +
 
 +
sepal primordium
 +
 
 +
stamen primordium
 +
 
 +
root anlagen
 +
 
 +
root primordium
 +
 
 +
vascular leaf primordium
  
−
Added "vascular tissue" exact synonym of "portion of vascular tissue".
 
  
−
Modified definition and comment of tuber (PO:0004543) and comment of subterranean tuber (PO:0004547).
 
  
−
Made 8 terms subtypes the bin term floral structure primordium (PO:0025477).
+
*other changes to primordium terms:
  
−
Made primordium (PO:0025127) is_a meristem, and updated definition.
+
Made primordium (PO:0025127) is_a meristem
  
−
Updated definitions of subtypes of primordium:
+
Made 8 terms subtypes of the bin term floral structure primordium (PO:0025477) (and removed redundant relations from its subtypes)
−
androecium primordium, anther primordium, gynoecium primordium, ovule primordium, phyllome primordium, vascular leaf primordium, carpel primordium, cotyldeon primordium, lodicule primordium, petal primordium, sepal primordium, stamen primordium
 
  
 
Added "portion of xxx primordium tissue" as synonyms to all primordium types.
 
Added "portion of xxx primordium tissue" as synonyms to all primordium types.
  
−
Updated definition of root primodrium and lateral root primordium, and removed  relation lateral root primordium develops_from pericycle (PO:0006203), because it is not always true.
+
Removed the relation: lateral root primordium develops_from pericycle (PO:0006203), because it is not always true.
 +
 
 +
Made root anlagen is_a portion of plant tissue
  
 
Added adventitious root primordium as synonym of basal root primordium and shoot-borne root primordium.
 
Added adventitious root primordium as synonym of basal root primordium and shoot-borne root primordium.
  
−
pericyclic and non-pericyclic lateral root and lateral root primordium - new terms
 
  
−
Updated definition of root anlagen. Made it is_a portion of plant tissue
+
 
 +
 
 +
==New or modified synonyms==
  
 
Added tuber branch as exact synonym of tuber.
 
Added tuber branch as exact synonym of tuber.
  
−
Added promersitem as synonym of apical meristem and shoot apical meristem (broad). Was synonym of only root apical meristem.
+
Added "vascular tissue" exact synonym of "portion of vascular tissue".
 +
 
  
−
Changed definition of shoot apex to say "has as parts ...the youngest phyllome primordia" instead of "...leaf primordia".
+
Added promeristem as synonym of apical meristem and shoot apical meristem (broad). (Was synonym of only root apical meristem).
  
 +
Added "pistil primordium" as exact synonym of gynoecium primordium.
  
−
Updated definition of leaf sheath auricle, and changed from part_of vascular leaf to part_of leaf sheath.
+
Changed "pistil", as synonym of gynoecium, from related to exact.  
  
−
Changed "pistil", as synonym of gynoecium, from related to exact. Added "pistil primordium" as exact synonym of gynoecium primordium.
+
Changed pistil to broad synonym of gynoecium and carpel
  
−
Updated definitions and comments of phyllome marginal meristem and leaf marginal meristem.
+
Added "AM" as exact synonym of apical meristem
 +
 
 +
Added syncarpous gynoecium and apocarpous gynoecium as synonyms of gynoecium
 +
 
 +
 
 +
 
 +
 
 +
==New or modified relations==
 +
 
 +
Made leaf sheath auricle part_of leaf sheath, rather than part_of vascular leaf to
  
 
Added phyllome margin part_of phyllome lamina
 
Added phyllome margin part_of phyllome lamina
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Removed leaf marginal meristem part_of vascular leaf primordium
 
Removed leaf marginal meristem part_of vascular leaf primordium
  
−
Updated definitions of phyllome primordium to say that it is part of shoot apex, plus definition of cotyledon and vascular leaf primordium to say they are part_of vegetative shoot apex, and definition of bract primordium part of reproductive shoot apex. Relations were already there. Added "is part of a reproductive shoot apex (PO:0025222)" to definition of floral structure primordium and removed redundant relations from its subtypes.
+
Removed relation: ovule part_of ovary
  
−
Added "part_of peripheral zone (PO:0000225)" to definition of phyllome anlagen (relation was already there).
+
Changed funicle from part_of ovary to part of_ovule
  
−
Added relations: bract primordium develops_from bract anlagen, lodicule primordium develops_from lodicule anlagen, petal primordium develops_from petal anlagen, sepal primordium develops_from sepal anlagen, stamen primordium develops_from stamen anlagen
+
Removed ovule part_of ovary
  
−
Changed name of meristem (PO:0009013) to portion of meristem tissue
+
Changed ovule from is_a cardinal organ part to is_a plant organ
  
−
Added "AM" as exact synonym of apical meristem.
+
Made embryo sac part_of ovarian ovule instead of part of ovule
  
−
Changed pistil to broad synonym of gynoecium and carpel
+
 +
'''Added relations:'''
  
−
Added syncarpous gynoecium and apocarpous gynoecium as synonyms of gynoecium.
+
Added relation "located_in". Need to check on how to link to BFO/RO
  
−
Modified comment for plant organ.
+
bract primordium develops_from bract anlagen
  
−
Updated definition of ovule (PO:0020003). Changed funicle from part of ovary to part of ovule. Removed ovule part_of ovary. Changed ovule from is_a cardinal organ part to is_a plant organ. Made embryo sac part_of ovarian ovule instead of part of ovule.
+
lodicule primordium develops_from lodicule anlagen
  
−
Removed relation ovule part of ovary.
+
petal primordium develops_from petal anlagen
  
−
Modified definition of ovule to use located in rather than contains.
+
sepal primordium develops_from sepal anlagen
  
−
Added comment to Antiraphe, chalaza, integument, nucellus, and raphe and funicle, and added PO ids to their definitions.
+
stamen primordium develops_from stamen anlagen
  
−
Added relation "located_in". Need to check on how to link to BFO/RO.
+
embryo sac part_of plant ovary ovule changed to '''located_in'''
  
−
Changed embryo sac part_of plant ovary ovule to located_in. Will change others later, after we see how it works.
+
==Other changes:==
  
−
Updated definition of gynoecium and androecium.
+
Changed name of meristem (PO:0009013) to portion of meristem tissue
  
−
Changed comment of subterranean tuber interfascicular region.
+
New term: multi-tissue plant structure (PO:0025496): A plant structure (PO:0009011) that has as parts two or more portions of plant tissue (PO:0009007) of at least two different types and which through specific morphogenetic processes forms a single structural unit demarcated by primarily bona-fide boundaries from other structural units of different types. [source: CARO:0000055, POC:curators]
  
−
Updated definition of lateral root.
+
fruit (PO:0009001)- A multi-tissue plant structure (PO:0025496) that develops from a gynoecium (PO:0009062) and may have as parts one or more seeds (PO:0009010).
  
−
Updated definition of root primordium and lateral root primordium.
+
seed (PO:0009010)-  A multi-tissue plant structure (PO:0025496) that develops from a plant ovule (PO:0020003) and has as parts a plant embryo (PO:0009009) enclosed in a seed coat (PO:0009088).
  
−
Updated comment of root anlagen.
+
Added definition dbxref to CARO:0000055 for multi-tissue plant structure
  
−
Updated comment of whole plant to remove example of seed.
 
  
 
Made collective organ part structure (PO:0025269) a child of new CPS (PO:0025497), revised def'n: A collective plant structure (PO:0025497) composed of two or more cardinal organ parts (PO:0025001) from adjacent plant organs (PO:0009008) and any associated portions of plant tissue (PO:0009007).  
 
Made collective organ part structure (PO:0025269) a child of new CPS (PO:0025497), revised def'n: A collective plant structure (PO:0025497) composed of two or more cardinal organ parts (PO:0025001) from adjacent plant organs (PO:0009008) and any associated portions of plant tissue (PO:0009007).  
Line 95: Line 199:
 
Revised comment: Examples include stem (PO:0009047), leaf (PO:0025034), and root (PO:0009005). May include individual cell types that are not part of tissues (e.g., idioblasts (PO:0000283)). A plant organ may have one or more different plant organs as parts, such as sporophyll (PO:0009026) that may have as part a sporangium (PO:0025094) or a carpel that may have as part an plant ovule (PO:0020003).  
 
Revised comment: Examples include stem (PO:0009047), leaf (PO:0025034), and root (PO:0009005). May include individual cell types that are not part of tissues (e.g., idioblasts (PO:0000283)). A plant organ may have one or more different plant organs as parts, such as sporophyll (PO:0009026) that may have as part a sporangium (PO:0025094) or a carpel that may have as part an plant ovule (PO:0020003).  
  
−
seed (PO:0009010) revised def'n:  A multi-tissue plant structure (PO:0025496) that develops from a plant ovule (PO:0020003) and has as parts a plant embryo (PO:0009009) enclosed in a seed coat (PO:0009088).
 
  
 +
Changed definition of pollen sac to say : "A microsporangium that is part of a sporophyll..." rather than "A microsporangium that is located in a sporophyll ...", because it was incorrect use of located in. We are reserving located in for different organisms, and sporangium is still same organism as the sporophyll.
  
−
fruit (PO:0009001)- revised def'n: A multi-tissue plant structure (PO:0025496) containing one or more plant embryos (PO:0009009), which as a whole, develops from a gynoecium (PO:0009062). (RW changed it again after this -- waiting for final definition approval).
 
−
 
−
Changed definition of pollen sac to say : "A microsporangium that is part of a sporophyll..." rather than "A microsporangium that is located in a sporophyll ...", because it was incorrect use of located in. We are reserving located in for different organisms, and sporangium is still same organism as the sporophyll.
 
  
 
Added protonema develops_from plant spore, because that is what the definition says.
 
Added protonema develops_from plant spore, because that is what the definition says.
  
−
Made CPS is_a plant structure (not is_a MTPS).
 
  
−
Added definition dbxref to CARO:0000055 for multi-tissue plant structure.
 
  
 
Moved the following terms from is_a cardinal organ part to is_a cardinal part of MTPS:
 
Moved the following terms from is_a cardinal organ part to is_a cardinal part of MTPS:
Line 121: Line 220:
 
Removed relation fruit pedicel part of fruit.
 
Removed relation fruit pedicel part of fruit.
  
−
Updated definition of hilum groove to say that it is a canal, instead of cardinal organ part.
+
Updated definition of hilum groove to say that it is a canal, instead of cardinal organ part
 +
 
 
Updated definitions of arilloid, hilum, seed funicle, seed raphe,  fruit proximal end, and  fruit distal end to say that they are now cardinal part of multi-tissue plant structure, instead of cardinal organ part, and added PO ids.
 
Updated definitions of arilloid, hilum, seed funicle, seed raphe,  fruit proximal end, and  fruit distal end to say that they are now cardinal part of multi-tissue plant structure, instead of cardinal organ part, and added PO ids.
 +
 
Changed definition of fruit proximal end to say it is the proximal end of a fruit, instead of saying it is the stem end of a fruit.
 
Changed definition of fruit proximal end to say it is the proximal end of a fruit, instead of saying it is the stem end of a fruit.
  
−
Updated definition of multi-tissue plant structure (PO:0025496), fruit (PO:0009001).
+
 
  
 
Updated comment of plant organ (PO:0009008).
 
Updated comment of plant organ (PO:0009008).
Line 421: Line 522:
 
PO:0001027 meristamtic zone formation
 
PO:0001027 meristamtic zone formation
  
−
+
PO:0001000 meristem eloboration
−
PO:0001000 meristem eloboration
 
  
−
PO:0007060 obsolete growth and development terms
+
PO:0007060 obsolete growth and development terms
  
−
PO:0007532 obsolete plant growth and development terms
+
PO:0007532 obsolete plant growth and development terms
  
−
PO:0007061 2.00 main shoot only
+
PO:0007061 2.00 main shoot only
  
−
PO:0001030 specialization zone formation
+
PO:0001030 specialization zone formation
  
−
PO:0007610 sepals 100% of final size
+
PO:0007610 sepals 100% of final size
  
−
PO:0007609 sepals 50% of final size
+
PO:0007609 sepals 50% of final size
  
−
PO:0007536 root primordium visible
+
PO:0007536 root primordium visible
  
−
PO:0028001 plant life cycle phase
+
PO:0028001 plant life cycle phase
  
−
PO:0007075 5.02 20% of inflorescence emerged.
+
PO:0007075 5.02 20% of inflorescence emerged.
 
   
 
   
−
PO:0007102 5.04 40% of inflorescence emerged
+
PO:0007102 5.04 40% of inflorescence emerged
  
−
PO:0007105 5.06 60% of inflorescence emerged
+
PO:0007105 5.06 60% of inflorescence emerged
  
−
PO:0007107 5.08 80% of inflorescence emerged
+
PO:0007107 5.08 80% of inflorescence emerged
 
   
 
   
−
PO:0001098 formation of starchy endosperm
+
PO:0001098 formation of starchy endosperm
  
−
PO:0007529 E emerged root elongation
+
PO:0007529 E emerged root elongation
  
−
PO:0007531 F1 root hair initiation
+
PO:0007531 F1 root hair initiation
  
−
PO:0007526 F2 root hair elongation
+
PO:0007526 F2 root hair elongation
  
−
PO:0007121 6.01 10% of flowers open
+
PO:0007121 6.01 10% of flowers open
  
−
PO:0007124 6.03 30% of flowers open
+
PO:0007124 6.03 30% of flowers open
  
−
PO:0007125 6.04 40% of flowers open
+
PO:0007125 6.04 40% of flowers open
  
−
PO:0007035 7-8 fruit formation and maturation
+
PO:0007035 7-8 fruit formation and maturation
  
−
PO:0007126 7.02 fruit size 20%
+
PO:0007126 7.02 fruit size 20%
  
−
PO:0007127 7.04 fruit size 40%
+
PO:0007127 7.04 fruit size 40%
  
−
PO:0007128 7.06 fruit size 60%
+
PO:0007128 7.06 fruit size 60%
  
−
PO:0007129 7.08 fruit size 80%
+
PO:0007129 7.08 fruit size 80%
  
−
PO:0007503 A2.1 root intials differntiation of primary roots
+
PO:0007503 A2.1 root intials differntiation of primary roots
  
−
PO:0007528 A2.2 root initials differentiation of lateral roots
+
PO:0007528 A2.2 root initials differentiation of lateral roots
  
−
PO:0007530 A2.3 founder cell derivatives of lateral root
+
PO:0007530 A2.3 founder cell derivatives of lateral root
  
−
PO:0007534 A2.4 root initials differentiation of crown roots
+
PO:0007534 A2.4 root initials differentiation of crown roots
  
−
PO:0007524 B1 primary root meristem formation
+
PO:0007524 B1 primary root meristem formation
  
−
PO:0007539 B2 lateral root meristem formation
+
PO:0007539 B2 lateral root meristem formation
  
−
PO:0007514 B3 crown root meristem formation
+
PO:0007514 B3 crown root meristem formation
  
−
PO:0007521 C3.1 metaxylem differentiation of root.
+
PO:0007521 C3.1 metaxylem differentiation of root.
  
−
PO:0007537 C3.2 maturation of phloem elements in root.
+
PO:0007537 C3.2 maturation of phloem elements in root.
  
−
PO:0007533 C3.3 maturation of protoxylem elements in root.
+
PO:0007533 C3.3 maturation of protoxylem elements in root.
  
−
PO:0021002 calyx absolute size
+
PO:0021002 calyx absolute size
  
−
PO:0021003 calyx relationship
+
PO:0021003 calyx relationship
 
   
 
   
−
PO:0001028 elongation zone formation
+
PO:0001028 elongation zone formation
  
−
PO:0007523 establishment of initial cells
+
PO:0007523 establishment of initial cells
  
  

Latest revision as of 00:42, 18 April 2014

See also: New terms and obsolete terms July 2012 Release

Back to July 2012 Release page.

Updated definitions and/or comments: PAE terms

areole bud (PO:0025353)

phyllome lamina areole (PO:0025391)

leaf lamina areole (PO:0025392)

leaf lamina vein (PO:0020138)

axillary vegetative bud (PO:0004712)

terminal vegetative bud (PO:0004716)

tuber (PO:0004543) (definition and comment)

subterranean tuber (PO:0004547) (comment)

phyllome marginal meristem (definitions and comments)

leaf marginal meristem (definitions and comments)

shoot apex (changed definition to: "has as parts ...the youngest phyllome primordia" instead of "...leaf primordia")

leaf sheath auricle

phyllome primordium (*updated definitions: part_of shoot apex)

cotyledon primordium (*updated definitions: part_of vegetative shoot apex)

vascular leaf primordium (*updated definitions: part_of vegetative shoot apex)

bract primordium (*updated definitions: part_of reproductive shoot apex) *relations were already there.

floral structure primordium (added "is part-of a reproductive shoot apex (PO:0025222)" to definition) Removed redundant relations from its subtypes.

plant organ (Modified comment)

ovule (PO:0020003) (modified def'n: use located in rather than contains)

gynoecium

androecium

subterranean tuber interfascicular region (comment)

lateral root

root primordium

lateral root primordium

root anlagen (comment)

whole plant (removed example seed example in comment)

phyllome anlagen (added "part_of peripheral zone (PO:0000225)" to definition of, relation was already there)


antiraphe, chalaza, integument, nucellus, raphe, funicle (Added comment and added PO ids to their definitions)



  • Updated definition of primordium and its subtypes:

primordium (PO:0025127)

androecium primordium

anther primordium

carpel primordium

cotyldeon primordium

gynoecium primordium

lateral root primordium

lodicule primordium

ovule primordium

petal primordium

phyllome primordium

sepal primordium

stamen primordium

root anlagen

root primordium

vascular leaf primordium


  • other changes to primordium terms:

Made primordium (PO:0025127) is_a meristem

Made 8 terms subtypes of the bin term floral structure primordium (PO:0025477) (and removed redundant relations from its subtypes)

Added "portion of xxx primordium tissue" as synonyms to all primordium types.

Removed the relation: lateral root primordium develops_from pericycle (PO:0006203), because it is not always true.

Made root anlagen is_a portion of plant tissue

Added adventitious root primordium as synonym of basal root primordium and shoot-borne root primordium.



New or modified synonyms

Added tuber branch as exact synonym of tuber.

Added "vascular tissue" exact synonym of "portion of vascular tissue".


Added promeristem as synonym of apical meristem and shoot apical meristem (broad). (Was synonym of only root apical meristem).

Added "pistil primordium" as exact synonym of gynoecium primordium.

Changed "pistil", as synonym of gynoecium, from related to exact.

Changed pistil to broad synonym of gynoecium and carpel

Added "AM" as exact synonym of apical meristem

Added syncarpous gynoecium and apocarpous gynoecium as synonyms of gynoecium



New or modified relations

Made leaf sheath auricle part_of leaf sheath, rather than part_of vascular leaf to

Added phyllome margin part_of phyllome lamina

Removed phyllome marginal meristem part_of phyllome (now redundant)

Removed phyllome marginal meristem part_of phyllome primordium

Removed leaf marginal meristem part_of vascular leaf primordium

Removed relation: ovule part_of ovary

Changed funicle from part_of ovary to part of_ovule

Removed ovule part_of ovary

Changed ovule from is_a cardinal organ part to is_a plant organ

Made embryo sac part_of ovarian ovule instead of part of ovule


Added relations:

Added relation "located_in". Need to check on how to link to BFO/RO

bract primordium develops_from bract anlagen

lodicule primordium develops_from lodicule anlagen

petal primordium develops_from petal anlagen

sepal primordium develops_from sepal anlagen

stamen primordium develops_from stamen anlagen

embryo sac part_of plant ovary ovule changed to located_in

Other changes:

Changed name of meristem (PO:0009013) to portion of meristem tissue

New term: multi-tissue plant structure (PO:0025496): A plant structure (PO:0009011) that has as parts two or more portions of plant tissue (PO:0009007) of at least two different types and which through specific morphogenetic processes forms a single structural unit demarcated by primarily bona-fide boundaries from other structural units of different types. [source: CARO:0000055, POC:curators]

fruit (PO:0009001)- A multi-tissue plant structure (PO:0025496) that develops from a gynoecium (PO:0009062) and may have as parts one or more seeds (PO:0009010).

seed (PO:0009010)- A multi-tissue plant structure (PO:0025496) that develops from a plant ovule (PO:0020003) and has as parts a plant embryo (PO:0009009) enclosed in a seed coat (PO:0009088).

Added definition dbxref to CARO:0000055 for multi-tissue plant structure


Made collective organ part structure (PO:0025269) a child of new CPS (PO:0025497), revised def'n: A collective plant structure (PO:0025497) composed of two or more cardinal organ parts (PO:0025001) from adjacent plant organs (PO:0009008) and any associated portions of plant tissue (PO:0009007).

Sub-classes of new MTPS: plant organ (PO:0009008): revised def'n: A multi-tissue plant structure (PO:0025496) that is a functional unit, is a proper part of a whole plant (PO:0000003), and includes portions of plant tissue (PO:0009007) of at least two different types that derive from a common developmental path.

Revised comment: Examples include stem (PO:0009047), leaf (PO:0025034), and root (PO:0009005). May include individual cell types that are not part of tissues (e.g., idioblasts (PO:0000283)). A plant organ may have one or more different plant organs as parts, such as sporophyll (PO:0009026) that may have as part a sporangium (PO:0025094) or a carpel that may have as part an plant ovule (PO:0020003).


Changed definition of pollen sac to say : "A microsporangium that is part of a sporophyll..." rather than "A microsporangium that is located in a sporophyll ...", because it was incorrect use of located in. We are reserving located in for different organisms, and sporangium is still same organism as the sporophyll.


Added protonema develops_from plant spore, because that is what the definition says.


Moved the following terms from is_a cardinal organ part to is_a cardinal part of MTPS: fruit distal end PO:0008001, fruit proximal end PO:0008002, arilloid PO:0019022, hilum PO:0020063, seed raphe PO:0006331

Changed seed funicle from is_a stalk to is_a cardinal part of MTPS.

Changed strophiole from part of raphe to part of seed raphe.

Changed hilum groove from is_a cardinal organ part to is_a canal.

Changed vascular system (PO:0000034) from is_a plant structure to is_a portion of vascular tissue, and changed definition. Removed relation vascular system disjoint from portion of plant tissue.

Removed relation fruit pedicel part of fruit.

Updated definition of hilum groove to say that it is a canal, instead of cardinal organ part

Updated definitions of arilloid, hilum, seed funicle, seed raphe, fruit proximal end, and fruit distal end to say that they are now cardinal part of multi-tissue plant structure, instead of cardinal organ part, and added PO ids.

Changed definition of fruit proximal end to say it is the proximal end of a fruit, instead of saying it is the stem end of a fruit.


Updated comment of plant organ (PO:0009008).

Updated definition of collective organ part structure (small change) Updated comment to include ids and remove references to PO terms that don't exist, like carpel wall.

Removed "collective plant organ structure" as exact synonym from PO:0025007, because it is now the primary name, and moved Spanish and Japanese synonyms to collective plant structure.

Revised comment of cardinal organ part, and added cardinal part of plant organ as synonym.

PSDS term revisions

Name changes:

Added "stage" to the end of these terms: "done for July 2012 release- note many of these are obsoletes- highlighted"

PO:0007601 1 flower meristem visible

PO:0007056 1 pattern formation

PO:0007505 1 root primordium formation

PO:0007058 2 endoreduplication

PO:0007602 2 flower meristem notched

PO:0007527 2 root meristem formation

PO:0007087 2.01 main shoot and axillary shoots visible at one node

PO:0007071 2.02 main shoot and axillary shoots visible at two nodes

PO:0007080 2.03 main shoot and axillary shoots visible at three nodes

PO:0007088 2.04 main shoot and axillary shoots visible at four nodes

PO:0007093 2.05 main shoot and axillary shoots visible at five nodes

PO:0007118 2.06 main shoot and axillary shoots visible at six nodes

PO:0007122 2.07 main shoot and axillary shoots visible at seven nodes

PO:0007077 2.08 main shoot and axillary shoots visible at eight nodes

PO:0007110 2.09 main shoot and axillary shoots visible at nine or more nodes

PO:0007059 3 branch formation

PO:0007525 3 establishment of tissue systems

PO:0001053 3 leaf fully expanded

PO:0007616 4 anthesis

PO:0007016 4 flowering

PO:0007135 4 growth directionality

PO:0001031 4 root elongation

PO:0007042 5 fruit formation

PO:0007617 5 post anthesis

PO:0007519 5 root hair formation

PO:0007010 6 ripening

PO:0001005 A archesporial cells visible

PO:0007623 A megaspore mother cell enlarges

PO:0001018 B formation of primary parietal and sporogenous cells

PO:0007624 B meiosis of megaspore mother cell

PO:0001008 C callose wall formation in pollen mother cells

PO:0001025 C four anther lobes formed

PO:0007625 C tetrad of megaspores

PO:0007618 carpel primordium visible

PO:0001041 chalazal and micropylar domain establishment

PO:0004502 closure of carpel(s)

PO:0007518 crown root emergence

PO:0007504 crown root primordium formation

PO:0001026 D locules established

PO:0007626 D megaspore degeneration

PO:0001032 E tapetum degeneration initiated

PO:0007627 E two nucleate megagametophyte

PO:0007081 early rosette growth

PO:0007628 F four nucleate megagametophyte

PO:0007026 FL.00 first flower(s) open

PO:0007034 FL.01 1/4 of flowers open

PO:0007053 FL.02 1/2 of flowers open

PO:0007052 FL.03 3/4 of flowers open

PO:0007024 FL.04 end of flowering

PO:0001099 formation of aleurone and starchy layers

PO:0001019 formation of leaf primordium

PO:0004500 formation of leaflet primordia

PO:0001021 formation of ligule primordium

PO:0001003 formation of the leaf founder cells

PO:0007036 FR.00 beginning of fruit ripening

PO:0007038 FR.04 fruit ripening complete

PO:0001057 fully expanded lemma

PO:0001079 fully expanded lodicule

PO:0001071 fully expanded palea

PO:0007612 fully expanded petal

PO:0001045 fully expanded sepal

PO:0001042 functional specialization of the endosperm

PO:0001035 G anther dehiscence

PO:0007629 G eight nucleate megagametophyte

PO:0004501 gynoecium differentiation and expansion

PO:0001036 H anther senescence

PO:0001020 hood-shaped primordium

PO:0007025 IE.00 inflorescence tip just visible above flag leaf sheath

PO:0007048 IE.01 1/4 of inflorescence emerged from flag leaf sheath

PO:0007008 IE.02 1/2 of inflorescence emerged from flag leaf sheath

PO:0007002 IE.03 3/4 of inflorescence emerged from flag leaf sheath

PO:0007023 IE.04 inflorescence fully emerged from flag leaf sheath

PO:0007076 late rosette growth

PO:0007517 lateral root emergence

PO:0007511 lateral root primordium formation

PO:0007133 leaf production

PO:0001055 lemma primordia visible

PO:0025337 life of whole plant

PO:0001072 lodicule primordia visible

PO:0007094 LP.01 one leaf visible

PO:0007098 LP.02 two leaves visible

PO:0007106 LP.03 three leaves visible

PO:0007115 LP.04 four leaves visible

PO:0007065 LP.05 five leaves visible

PO:0007123 LP.06 six leaves visible

PO:0007063 LP.07 seven leaves visible

PO:0007095 LP.08 eight leaves visible

PO:0007101 LP.09 nine leaves visible

PO:0007103 LP.10 ten leaves visible

PO:0007116 LP.11 eleven leaves visible

PO:0007064 LP.12 twelve leaves visible

PO:0007083 LP.13 thirteen leaves visible

PO:0007085 LP.14 fourteen leaves visible

PO:0007104 LP.15 fifteen leaves visible

PO:0007119 LP.16 sixteen leaves visible

PO:0007067 LP.17 seventeen leaves visible

PO:0007072 LP.18 eighteen leaves visible

PO:0007120 LP.19 nineteen leaves visible

PO:0007082 LP.20 twenty or more leaves whorls visible

PO:0007068 mid rosette growth

PO:0004504 ovule differentiation and expansion

PO:0007620 ovule primordium visible

PO:0001058 palea primordia visible

PO:0007608 petal primordium visible

PO:0007506 primary root primordium formation

PO:0001023 rapid elongation of leaf blade

PO:0001024 rapid elongation of leaf sheath

PO:0007501 root cap formation

PO:0007513 root cortex differentiation

PO:0007510 root emergence

PO:0007516 root epidermal differentiation

PO:0007509 root vascular cylinder differentiation

PO:0007113 rosette growth

PO:0007078 rosette growth complete

PO:0007079 SE.00 stem elongation begins

PO:0007091 SE.01 one node or internode visible

PO:0007117 SE.02 two nodes or internodes visible

PO:0007096 SE.03 three nodes or internodes visible

PO:0007092 SE.04 four nodes or internodes visible

PO:0007086 SE.05 five nodes or internodes visible

PO:0007062 SE.06 six nodes or internodes visible

PO:0007108 SE.07 seven nodes or internodes visible

PO:0007070 SE.08 eight nodes or internodes visible

PO:0007066 SE.09 nine nodes or internodes visible

PO:0007084 SE.10 ten nodes or internodes visible

PO:0007114 SE.11 eleven nodes or internodes visible

PO:0007111 SE.12 twelve nodes or internodes visible

PO:0007090 SE.13 thirteen nodes or internodes visible

PO:0007097 SE.14 fourteen nodes or internodes visible

PO:0007074 SE.15 fifteen nodes or internodes visible

PO:0007100 SE.16 sixteen or more nodes or internodes visible

PO:0007099 SE.97 flag leaf visible

PO:0007109 SE.99 maximum stem length reached

PO:0007607 sepal primordium visible

PO:0001380 sepals enclosing flower bud

PO:0001378 sepals enclosing meristem

PO:0007613 stamen primordium visible

PO:0007089 stem elongation

PO:0004503 stigma cell differentiation

PO:0001095 true leaf formation

PO:0001027 meristamtic zone formation

PO:0001000 meristem eloboration

PO:0007060 obsolete growth and development terms

PO:0007532 obsolete plant growth and development terms

PO:0007061 2.00 main shoot only

PO:0001030 specialization zone formation

PO:0007610 sepals 100% of final size

PO:0007609 sepals 50% of final size

PO:0007536 root primordium visible

PO:0028001 plant life cycle phase

PO:0007075 5.02 20% of inflorescence emerged.

PO:0007102 5.04 40% of inflorescence emerged

PO:0007105 5.06 60% of inflorescence emerged

PO:0007107 5.08 80% of inflorescence emerged

PO:0001098 formation of starchy endosperm

PO:0007529 E emerged root elongation

PO:0007531 F1 root hair initiation

PO:0007526 F2 root hair elongation

PO:0007121 6.01 10% of flowers open

PO:0007124 6.03 30% of flowers open

PO:0007125 6.04 40% of flowers open

PO:0007035 7-8 fruit formation and maturation

PO:0007126 7.02 fruit size 20%

PO:0007127 7.04 fruit size 40%

PO:0007128 7.06 fruit size 60%

PO:0007129 7.08 fruit size 80%

PO:0007503 A2.1 root intials differntiation of primary roots

PO:0007528 A2.2 root initials differentiation of lateral roots

PO:0007530 A2.3 founder cell derivatives of lateral root

PO:0007534 A2.4 root initials differentiation of crown roots

PO:0007524 B1 primary root meristem formation

PO:0007539 B2 lateral root meristem formation

PO:0007514 B3 crown root meristem formation

PO:0007521 C3.1 metaxylem differentiation of root.

PO:0007537 C3.2 maturation of phloem elements in root.

PO:0007533 C3.3 maturation of protoxylem elements in root.

PO:0021002 calyx absolute size

PO:0021003 calyx relationship

PO:0001028 elongation zone formation

PO:0007523 establishment of initial cells


See also: New terms and obsolete terms July 2012 Release

Back to July 2012 Release page.

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