Difference between revisions of "New terms and obsolete terms for Jan2011 release"

Latest revision as of 17:34, 24 January 2011

Back to Jan 2011 Release Page

Back to Summary of Changes to PO Jan2011

List of Obsoleted Terms

pollen tube (PO:0006345) 97 pages of annotations: 4864 Arabidopsis and 1 each from S.tuberosum and rice. Consider pollen tube cell (PO:0025195). New term pollen tube was requested in GO; GO ID (GO:0090406) has been added to the obsoleted term.

pollen tube tip (PO:0000028) 9 annotations from Arabidopsis. Consider pollen tube cell (PO:0025195). New term pollen tube tip was requested in GO; GO ID (GO:0090404) has been added to the obsoleted term.

root hair tip (PO:0000029) 1 annotation from Arabidopsis. Consider root hair cell (PO:0000256), or root hair tip (GO:0035619).

floral epidermis (PO:0008043) 1 annotation from Arabidopsis. Consider carpel epidermis (PO:0025096), petal epidermis (PO:0006041), sepal epidermis (PO:0006040), stamen epidermis (PO:0025097), or tepal epidermis (PO:0025184)

papillae (PO:0002001) 6 annotations from Arabidopsis. Consider: papilla cell (PO:0025166), leaf papilla cell (PO:0025167), stigma papilla cell ( PO:0025168) or plant cell papilla (GO:0090395), leaf papilla (GO:0090396) or stigma papilla

primary root elongation zone (PO:0003003) 49 annotations from Arabidopsis, 1 from Oryza. Replaced by new term primary root elongation zone (PO:0025257).

lateral root elongation zone (PO:0003014) 4 annotations from Arabidopsis. Replaced by new term lateral root elongation zone (PO:0025256).

Others: No Annotations associated with them:

basal endosperm transfer layer (PO:0009019) (created new term with same name, but new def'n and id). No annotations
trichome branch (PO:0008031). replaced by 'multicellular trichome branch cell (PO:0025163)' in PO, plus unicellular trichome branch in GO- waiting for ID#): No Annotations
floral stomatal complex (PO:0008044): no annotations
floral guard cell (PO:0008045): no annotations
floral stomatal pore (PO:0008046): no annotations

List of Renamed Terms

root hair (PO:0000256) ~100 annotations from Arabidopsis, maize, rice and S.lycopersicum. The name was changed to 'root hair cel'l (PO:0000256), because the definition of the term was for a cell, not just for the hair. Annotations that belong only to the cell extension should be moved to root hair (GO:0035618) or root hair tip (GO:0035619).

differentiation zone (PO:0020135)- Renamed 'root differentiation zone', (PO:0020135), 6 annotations from Arabidopsis. These should not need to be moved.

elongation zone (PO:0020125) 36 annotations from Arabidopsis, 1 from rice Replaced by root elongation zone (PO:0025181).

secretory trichome (PO:0004509) was renamed glandular trichome (PO:0004509)

seed hair (PO:0004511) was renamed 'seed trichome' (formerly a synonym), made 'seed hair' an exact synonym, added 'pubescence' as related synonym.

valve (PO:0000033) was renamed fruit valve, with updated definition and new parent valve (PO:0025228).

hull (PO:0006000) was renamed Poaceae hull to distinguish it from other types of hulls 11 annotations from Oryza gene and QTL

old microsporangium (PO:0009070) was renamed pollen sac and made a child of new microsporangium (PO:0025202)

List of replacement terms

These terms were made obsolete and replaced by new terms with the same name but new definitions, because the old definitions were incorrect:

elongation zone (PO:0020125) replaced by root elongation zone (PO:0025181)

obsolete lateral root elongation zone (PO:0003014) replaced by lateral root elongation zone (PO:0025256)

obsolete primary root elongation zone (PO:0003003) replaced by primary root elongation zone (PO:0025257)

obsolete basal endosperm transfer layer (PO:0009019) replaced by basal endosperm transfer layer (PO:0025196)

List of New Terms-general:

plant anatomical entity (PO:0025131): An anatomical entity (CARO:0000000) that is or was part of a plant.
plant anatomical space (PO:0025117): An anatomical space (CARO:0000005) that is part of a plant.
portion of plant substance (PO:0025161)

embryonic plant structure PO:0025099

axil id: PO:0025224
branch axil PO:0025226
bract axil PO:0025225

reproductive shoot system PO:0025082

gynoecium ridge PO:0025088
Poaceae gynoecium ridge PO:0025086
Zea gynoecium ridge PO:0025087

dehiscence zone PO:0025092

primordium PO:0025127
phyllome primordium PO:0025128

root parenchyma PO:0025095

stele PO:0025197
shoot axis stele PO:0025198
branch stele PO:0025199
stem stele PO:0025200

sporangium PO:0025094 (added during last release, but didn’t have definition),
microsporangium PO:0025202
megasporangium PO:0025201

gametangium PO:0025124
antheridium PO:0025125
archegonium PO:0025126

pericarp vascular bundle PO:0025203

shoot system vascular system PO:0025205 - Made different vascular systems of above ground parts child of this.
phyllome vascular system PO:0025206
tepal vascular system PO:0025207

reproductive shoot apex PO:0025222
vegetative shoot apex PO:0025223

columella PO:0025230
moss capsule columella PO:0025231
PO:0004540 was renamed fruit columella

canal PO:0025132
petiole canal PO:0025133
abaxial petiole canal PO:0025238
adaxial petiole canal PO:0025239

phyllome apex PO:0025139
phyllome base PO:0025140
phyllome tip PO:0025141

valve PO:0025228
moss capsule valve PO:0025229
PO:0000033 was renamed fruit valve

New terms- cells

antheridium sperm cell (PO:0025120)

pollen sperm cell (PO:0025121)

archegonium egg cell (PO:0025122)

embryo sac egg cell (PO:0025123)

multicellular trichome branch cell (PO:0025163)

root epidermal cell (PO:0025164)

shoot epidermal cell (PO:0025165)

papilla cell (PO:0025166)

leaf papilla cell (PO:0025167)

stigma papilla cell (PO:0025168)

pollen tube cell (PO:0025195)

leaf pavement cell (PO:0025212)

leaf abaxial pavement cell (PO:0025213)

leaf adaxial pavement cell (PO:0025214)

phyllome guard cell (PO:0025236)

leaf guard cell (PO:0025237)

List of new terms: trichome, epidermis, and related

carpel epidermis PO:0025096

stamen epidermis PO:0025097

bract trichome PO:0025098

cigar leaf lamina abaxial epidermis PO:0025135

peduncle epidermis PO:0025152

peduncle trichome PO:0025153

phyllome epidermis PO:0025157

bract epidermis PO:0025158

bract abaxial epidermis PO:0025159

bract adaxial epidermis PO:0025160

multicellular trichome PO:0025162

multicellular trichome branch cell PO:0025163

root epidermal cell PO:0025164

shoot epidermal cell PO:0025165

papilla cell PO:0025166

leaf papilla cell PO:0025167

stigma papilla cell PO:0025168

prickle PO:0025169

root prickle PO:0025170

shoot axis prickle PO:0025171

thorn PO:0025172

leaf spine PO:0025173

stipule spine PO:0025174

leaf prickle PO:0025175

stem trichome PO:0025176

branch trichome PO:0025177

stem epidermis PO:0025178

branch epidermis PO:0025179

sepal trichome PO:0025182

tepal epidermis PO:0025184

phyllome trichome PO:0025186

petal trichome PO:0025187

tepal trichome PO:0025188

tepal abaxial epidermis PO:0025192

tepal adaxial epidermis PO:0025193

carpel trichome PO:0025208

stamen trichome PO:0025209

leaf abaxial trichome PO:0025210

leaf adaxial trichome PO:0025211

leaf pavement cell PO:0025212

leaf abaxial pavement cell PO:0025213

leaf adaxial pavement cell PO:0025214

new terms- elongation and differentiation zones:

plant axis differentiation zone (PO:0025119)
differentiation zone (PO:0020135) was renamed root differentiation zone. Existing children lateral root differentiation zone (PO:0003016) and primary root differentiation zone (PO:0003015) remained, but got standardized definitions
shoot internode differentiation zone (PO:0025102)
branch internode differentiation zone (PO:0025103)
old term "stem internode differentiation zone" (PO:0008042) remained, but got standardized definition

plant axis elongation zone (PO:0025180)
root elongation zone (PO:0025181). Old term elongation zone (PO:0020125) was made obsolete, because definition of was incorrect.
lateral root elongation zone (PO:0025256) Old term lateral root elongation zone (PO:0003014) was made obsolete, because definition of was incorrect.
primary root elongation zone (PO:0025257) Old term primary root elongation zone (PO:0003003) was made obsolete, because definition of was incorrect.
shoot internode elongation zone (PO:0025100)
branch internode elongation zone (PO:0025101)
old term "stem internode elongation zone" (PO:0008041) remained, but got standardized definition

List of Terms stomatal complex:

phyllome stomatal complex PO:0025215

leaf stomatal complex PO:0025183

leaf lamina stomatal complex PO:0025185

petiole stomatal complex PO:0025189

leaf abaxial stomatal complex PO:0025190

leaf adaxial stomatal complex PO:0025191

bract stomatal complex PO:0025216

carpel stomatal complex PO:0025217

petal stomatal complex PO:0025218

sepal stomatal complex PO:0025219

stamen stomatal complex PO:0025220

tepal stomatal complex PO:0025221

plus:

phyllome stomatal pore PO:0025234

leaf stomatal pore PO:0025235

List of new terms in numerical order

id: PO:0025086 name: Poaceae gynoecium ridge

id: PO:0025087 name: Zea gynoecium ridge

id: PO:0025088 name: gynoecium ridge

id: PO:0025092 name: dehiscence zone

id: PO:0025093 name: moss capsule annulus

id: PO:0025094 name: sporangium

id: PO:0025095 name: root parenchyma

id: PO:0025096 name: carpel epidermis

id: PO:0025097 name: stamen epidermis

id: PO:0025098 name: bract trichome

id: PO:0025099 name: embryonic plant structure

id: PO:0025100 name: shoot internode elongation zone

id: PO:0025101 name: branch internode elongation zone

id: PO:0025102 name: shoot internode differentiation zone

id: PO:0025103 name: branch internode differentiation zone

id: PO:0025104 name: first order inflorescence axis

id: PO:0025105 name: forth order inflorescence axis

id: PO:0025106 name: fifth order inflorescence axis

id: PO:0025107 name: sixth order inflorescence axis

id: PO:0025108 name: seventh order inflorescence axis

id: PO:0025109 name: eighth order inflorescence axis

id: PO:0025110 name: ninth order inflorescence axis

id: PO:0025111 name: tenth or higher order inflorescence axis

id: PO:0025112 name: second order infructescence axis

id: PO:0025113 name: third order infructescence axis

id: PO:0025114 name: forth order infructescence axis

id: PO:0025115 name: fifth order infructescence axis

id: PO:0025116 name: sixth order infructescence axis

id: PO:0025117 name: plant anatomical space

id: PO:0025118 name: anther pore

id: PO:0025119 name: plant axis differentiation zone

id: PO:0025120 name: antheridium sperm cell

id: PO:0025121 name: pollen sperm cell

id: PO:0025122 name: archegonium egg cell

id: PO:0025123 name: embryo sac egg cell

id: PO:0025124 name: gametangium

id: PO:0025125 name: antheridium

id: PO:0025126 name: archegonium

id: PO:0025127 name: primordium

id: PO:0025128 name: phyllome primordium

id: PO:0025129 name: petiole lamina

id: PO:0025130 name: cigar leaf

id: PO:0025131 name: plant anatomical entity

id: PO:0025132 name: canal

id: PO:0025133 name: petiole canal

id: PO:0025134 name: inflorescence branch crown

id: PO:0025135 name: cigar leaf lamina abaxial epidermis

id: PO:0025136 name: free tepal

id: PO:0025137 name: fused tepal

id: PO:0025138 name: fused collective tepal structure

id: PO:0025139 name: phyllome apex

id: PO:0025140 name: phyllome base

id: PO:0025141 name: phyllome tip

id: PO:0025142 name: leaf tip

id: PO:0025143 name: tepal apex

id: PO:0025144 name: petal apex

id: PO:0025145 name: sepal apex

id: PO:0025146 name: petal base

id: PO:0025147 name: sepal base

id: PO:0025148 name: tepal base

id: PO:0025149 name: petal tip

id: PO:0025150 name: sepal tip

id: PO:0025151 name: tepal tip

id: PO:0025152 name: peduncle epidermis

id: PO:0025153 name: peduncle trichome

id: PO:0025154 name: bract apex

id: PO:0025155 name: bract base

id: PO:0025156 name: bract tip

id: PO:0025157 name: phyllome epidermis

id: PO:0025158 name: bract epidermis

id: PO:0025159 name: bract abaxial epidermis

id: PO:0025160 name: bract adaxial epidermis

id: PO:0025161 name: portion of plant substance

id: PO:0025162 name: multicellular trichome

id: PO:0025163 name: multicellular trichome branch cell

id: PO:0025164 name: root epidermal cell

id: PO:0025165 name: shoot epidermal cell

id: PO:0025166 name: papilla cell

id: PO:0025167 name: leaf papilla cell

id: PO:0025168 name: stigma papilla cell

id: PO:0025169 name: prickle

id: PO:0025170 name: root prickle

id: PO:0025171 name: shoot axis prickle

id: PO:0025172 name: thorn

id: PO:0025173 name: leaf spine

id: PO:0025174 name: stipule spine

id: PO:0025175 name: leaf prickle

id: PO:0025176 name: stem trichome

id: PO:0025177 name: branch trichome

id: PO:0025178 name: stem epidermis

id: PO:0025179 name: branch epidermis

id: PO:0025180 name: plant axis elongation zone

id: PO:0025181 name: root elongation zone

id: PO:0025182 name: sepal trichome

id: PO:0025183 name: leaf stomatal complex

id: PO:0025184 name: tepal epidermis

id: PO:0025185 name: leaf lamina stomatal complex

id: PO:0025186 name: phyllome trichome

id: PO:0025187 name: petal trichome

id: PO:0025188 name: tepal trichome

id: PO:0025189 name: petiole stomatal complex

id: PO:0025190 name: leaf abaxial stomatal complex

id: PO:0025191 name: leaf adaxial stomatal complex

id: PO:0025192 name: tepal abaxial epidermis

id: PO:0025193 name: tepal adaxial epidermis

id: PO:0025194 name: root nodule meristem

id: PO:0025195 name: pollen tube cell

id: PO:0025196 name: basal endosperm transfer layer

id: PO:0025197 name: stele

id: PO:0025198 name: shoot axis stele

id: PO:0025199 name: branch stele

id: PO:0025200 name: stem stele

id: PO:0025201 name: megasporangium

id: PO:0025202 name: microsporangium

id: PO:0025203 name: pericarp vascular bundle

id: PO:0025204 name: rhizome internode

id: PO:0025205 name: shoot system vascular system

id: PO:0025206 name: phyllome vascular system

id: PO:0025207 name: tepal vascular system

id: PO:0025208 name: carpel trichome

id: PO:0025209 name: stamen trichome

id: PO:0025210 name: leaf abaxial trichome

id: PO:0025211 name: leaf adaxial trichome

id: PO:0025212 name: leaf pavement cell

id: PO:0025213 name: leaf abaxial pavement cell

id: PO:0025214 name: leaf adaxial pavement cell

id: PO:0025215 name: phyllome stomatal complex

id: PO:0025216 name: bract stomatal complex

id: PO:0025217 name: carpel stomatal complex

id: PO:0025218 name: petal stomatal complex

id: PO:0025219 name: sepal stomatal complex

id: PO:0025220 name: stamen stomatal complex

id: PO:0025221 name: tepal stomatal complex

id: PO:0025222 name: reproductive shoot apex

id: PO:0025223 name: vegetative shoot apex

id: PO:0025224 name: axil

id: PO:0025225 name: bract axil

id: PO:0025226 name: branch axil

id: PO:0025227 name: tetrad of megaspores

id: PO:0025228 name: valve

id: PO:0025229 name: moss capsule valve

id: PO:0025230 name: columella

id: PO:0025231 name: moss capsule columella

id: PO:0025232 name: moss capsule

id: PO:0025233 name: embryonic plant tissue

id: PO:0025234 name: phyllome stomatal pore

id: PO:0025235 name: leaf stomatal pore

id: PO:0025236 name: phyllome guard cell

id: PO:0025237 name: leaf guard cell

id: PO:0025238 name: abaxial petiole canal

id: PO:0025239 name: adaxial petiole canal

id: PO:0025240 name: second order inflorescence

id: PO:0025241 name: second order infructescence

id: PO:0025242 name: infructescence axis

id: PO:0025243 name: infructescence branch

id: PO:0025244 name: first order infructescence axis

id: PO:0025245 name: persistent sepal

id: PO:0025246 name: persistent tepal

id: PO:0025247 name: persistent stamen

id: PO:0025248 name: pseudostem

id: PO:0025249 name: leaf sheath epidermis

id: PO:0025250 name: leaf sheath abaxial epidermis

id: PO:0025251 name: leaf sheath adaxial epidermis

id: PO:0025252 name: seventh order infructescence axis

id: PO:0025253 name: eighth order infructescence axis

id: PO:0025254 name: ninth order infructescence axis

id: PO:0025255 name: tenth or higher order infructescence axis

id: PO:0025256 name: lateral root elongation zone

id: PO:0025257 name: primary root elongation zone

Difference between revisions of "New terms and obsolete terms for Jan2011 release"

Latest revision as of 17:34, 24 January 2011

Contents

List of Obsoleted Terms

List of Renamed Terms

List of replacement terms

List of New Terms-general:

New terms- cells

List of new terms: trichome, epidermis, and related

new terms- elongation and differentiation zones:

List of Terms stomatal complex:

List of new terms in numerical order

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@@ Line 4: / Line 4: @@
 ==List of Obsoleted Terms==
-* pollen tube (PO:0006345) [http://www.plantontology.org/amigo/go.cgi?session_id=5689b1294171797&view=assoc&search_constraint=terms&query=PO:0006345&page=94 97 pages of annotations: from ''Arabidopsis'', maize and rice]
+* pollen tube (PO:0006345) [http://www.plantontology.org/amigo/go.cgi?session_id=5689b1294171797&view=assoc&search_constraint=terms&query=PO:0006345&page=94 97 pages of annotations: 4864 ''Arabidopsis'' and 1 each from S.tuberosum and rice].   Consider pollen tube cell (PO:0025195). New term pollen tube was requested in GO; GO ID (GO:0090406) has been added to the obsoleted term.
-Consider pollen tube cell (PO:0025195). New term pollen tube has been requested in GO; waiting for GO ID.
+* pollen tube tip (PO:0000028) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=8476b1294171984&view=assoc&query=PO%3A0000028&search_constraint=terms 9 annotations from ''Arabidopsis''].  Consider pollen tube cell (PO:0025195). New term pollen tube tip was requested in GO; GO ID (GO:0090404) has been added to the obsoleted term.
-* pollen tube tip (PO:0000028) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=8476b1294171984&view=assoc&query=PO%3A0000028&search_constraint=terms 9 annotations from ''Arabidopsis'']
+* root hair tip (PO:0000029)  [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=4940b1294172538&view=assoc&query=PO%3A0000029&search_constraint=terms 1 annotation from ''Arabidopsis''].  Consider root hair cell (PO:0000256), or root hair tip (GO:0035619).
-Consider pollen tube cell (PO:0025195). New term pollen tube tip has been requested in GO; waiting for GO ID.
+* floral epidermis (PO:0008043) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=158b1294173248&view=assoc&query=PO%3A0008043&search_constraint=terms 1 annotation from ''Arabidopsis''].  Consider carpel epidermis (PO:0025096), petal epidermis (PO:0006041), sepal epidermis (PO:0006040), stamen epidermis (PO:0025097), or tepal epidermis (PO:0025184)
-* root hair (PO:0000256) [http://www.plantontology.org/amigo/go.cgi?session_id=9177b1294172354&view=assoc&search_constraint=terms&query=PO:0000256&page_size=all ~100 annotations from various sources]
+* papillae (PO:0002001) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=1797b1294180398&view=assoc&query=PO%3A0002001&search_constraint=terms 6 annotations from ''Arabidopsis''].  Consider: papilla cell (PO:0025166), leaf papilla cell (PO:0025167), stigma papilla cell ( PO:0025168) or plant cell papilla (GO:0090395), leaf papilla (GO:0090396) or stigma papilla
-'''This term was not made obsolete.''' Instead the name was changed to root hair cell. This is because the definition of the term was for a cell, not just for the hair. Annotations that belong only to the cell extension should be moved to root hair (GO:0035618).
+* primary root elongation zone (PO:0003003) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=4638b1294180703&view=assoc&query=PO%3A0003003&search_constraint=terms 49 annotations from ''Arabidopsis'', 1 from ''Oryza''].  Replaced by new term primary root elongation zone (PO:0025257).
-* root hair tip (PO:0000029)  [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=4940b1294172538&view=assoc&query=PO%3A0000029&search_constraint=terms 1 annotation from ''Arabidopsis'']
+* lateral root elongation zone (PO:0003014) [http://www.plantontology.org/amigo/go.cgi?view=assoc&search_constraint=terms&depth=0&query=PO:0003014&session_id=5563b1294180915&show_associations=list 4 annotations from ''Arabidopsis''].  Replaced by new term lateral root elongation zone (PO:0025256).
-Consider root hair cell (PO:0000256), or root hair tip (GO:0035619).
+'''Others: No Annotations associated with them:'''
-* floral epidermis (PO:0008043) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=158b1294173248&view=assoc&query=PO%3A0008043&search_constraint=terms 1 annotation from ''Arabidopsis'']
+* basal endosperm transfer layer (PO:0009019) (created new term with same name, but new def'n and id). No annotations
+* trichome branch (PO:0008031). replaced by 'multicellular trichome branch cell (PO:0025163)' in PO,  plus unicellular trichome branch in GO- waiting for ID#): No Annotations
+* floral stomatal complex (PO:0008044): no annotations
+* floral guard cell (PO:0008045): no annotations
+* floral stomatal pore (PO:0008046): no annotations
-Consider carpel epidermis (PO:0025096), petal epidermis (PO:0006041), sepal epidermis (PO:0006040), stamen epidermis (PO:0025097), or tepal epidermis (PO:0025184)
+==List of Renamed Terms==
+* root hair (PO:0000256) [http://www.plantontology.org/amigo/go.cgi?session_id=9177b1294172354&view=assoc&search_constraint=terms&query=PO:0000256&page_size=all ~100 annotations from ''Arabidopsis'', maize, rice and S.lycopersicum]. The name was changed to 'root hair cel'l (PO:0000256), because the definition of the term was for a cell, not just for the hair. Annotations that belong only to the cell extension should be moved to root hair (GO:0035618) or root hair tip (GO:0035619).
+* differentiation zone (PO:0020135)- Renamed 'root differentiation zone', (PO:0020135), [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=1144b1294356759&view=assoc&query=PO%3A0020135&search_constraint=terms 6 annotations from ''Arabidopsis''].  These should not need to be moved.
+* elongation zone (PO:0020125) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=1646b1294179675&view=assoc&query=PO%3A0020125&search_constraint=terms 36 annotations from ''Arabidopsis'', 1 from rice] Replaced by root elongation zone (PO:0025181).
+* secretory trichome (PO:0004509) was renamed glandular trichome (PO:0004509)
+* seed hair (PO:0004511) was renamed 'seed trichome' (formerly a synonym), made 'seed hair' an exact synonym, added 'pubescence' as related synonym.
+* valve (PO:0000033) was renamed fruit valve, with updated definition and new parent valve (PO:0025228).
+* hull (PO:0006000) was renamed Poaceae hull to distinguish it from other types of hulls [http://www.plantontology.org/amigo/go.cgi?view=assoc&search_constraint=terms&query=PO:0006000&session_id=6293b1294429276 11 annotations from Oryza gene and QTL]
+* old microsporangium (PO:0009070) was renamed pollen sac and made a child of new microsporangium (PO:0025202)
+==List of replacement terms==
+These terms were made obsolete and replaced by new terms with the same name but new definitions, because the old definitions were incorrect:
+* elongation zone (PO:0020125) replaced by root elongation zone (PO:0025181)
+* obsolete lateral root elongation zone (PO:0003014) replaced by lateral root elongation zone (PO:0025256)
+* obsolete primary root elongation zone (PO:0003003) replaced by primary root elongation zone (PO:0025257)
+* obsolete basal endosperm transfer layer (PO:0009019) replaced by basal endosperm transfer layer (PO:0025196)
+==List of New Terms-general:==
+* plant anatomical entity (PO:0025131): An anatomical entity (CARO:0000000) that is or was part of a plant.
+* plant anatomical space (PO:0025117): An anatomical space (CARO:0000005) that is part of a plant.
+* portion of plant substance (PO:0025161)
-* elongation zone (PO:0020125) (replaced by root elongation zone (PO:0025181) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=1646b1294179675&view=assoc&query=PO%3A0020125&search_constraint=terms ~40 annotations, all from ''Arabidopsis'']
-Replaced by root elongation zone (PO:0025181).
-* papillae (PO:0002001) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=1797b1294180398&view=assoc&query=PO%3A0002001&search_constraint=terms 6 annotations from ''Arabidopsis'']
+* embryonic plant structure PO:0025099
-Consider: PO:0025166 papilla cell, PO:0025167 leaf papilla cell, PO:0025168 stigma papilla cell, or  GO:0090395 plant cell papilla, GO:0090396 leaf papilla, GO:0090397 stigma papilla
-* trichome branch (PO:0008031) (replaced by 'multicellular trichome branch cell' in PO plus unicellular trichome branch in GO):No Annotations
+* axil id: PO:0025224
+* branch axil PO:0025226
+* bract axil PO:0025225
-* differentiation zone (PO:0020135)-(replaced by root differentiation zone; PO:0020135)
-* basal endosperm transfer layer (PO:0009019) (created new term with same name, but new def'n and id) No annotations
+* reproductive shoot system PO:0025082
-* primary root elongation zone (PO:0003003) [http://www.plantontology.org/amigo/go.cgi?taxid=all&species_db=all&ev_code=aca&show_associations=direct&session_id=4638b1294180703&view=assoc&query=PO%3A0003003&search_constraint=terms ~40 annotations from ''Arabidopsis'', 1 from ''Oryza'']
-Replaced by new term primary root elongation zone (PO:0025257).
+* gynoecium ridge PO:0025088
+* Poaceae gynoecium ridge PO:0025086
+* Zea gynoecium ridge PO:0025087
-* lateral root elongation zone (PO:0003014) [http://www.plantontology.org/amigo/go.cgi?view=assoc&search_constraint=terms&depth=0&query=PO:0003014&session_id=5563b1294180915&show_associations=list 4 annotations from ''Arabidopsis'']
-Replaced by new term lateral root elongation zone (PO:0025256).
+* dehiscence zone PO:0025092
-Others:
+* primordium PO:0025127
+* phyllome primordium PO:0025128
-* floral stomatal complex (PO:0008044): no Annotations
-*floral guard cell (PO:0008045): no annotations
+* root parenchyma PO:0025095
-*floral stomatal pore (PO:0008046): no annotations
-==List of New Terms-general:==
+* stele PO:0025197
-* '''plant anatomical entity''' (PO:0025131): An anatomical entity (CARO:0000000) that is or was part of a plant.
+* shoot axis stele PO:0025198
-*''' plant anatomical space''' (PO:0025117): An anatomical space (CARO:0000005) that is part of a plant.
+* branch stele PO:0025199
+* stem stele PO:0025200
+* sporangium PO:0025094 (added during last release, but didn’t have definition),
+* microsporangium PO:0025202
+* megasporangium PO:0025201
+* gametangium PO:0025124
+* antheridium PO:0025125
+* archegonium PO:0025126
+* pericarp vascular bundle PO:0025203
+* shoot system vascular system PO:0025205 - Made different vascular systems of above ground parts child of this.
+* phyllome vascular system PO:0025206
+* tepal vascular system PO:0025207
+* reproductive shoot apex PO:0025222
+* vegetative shoot apex PO:0025223
-* '''axil''' (child of plant anatomical space)
-* '''leaf axil''' (PO:0009023) ''not a new term''
-* '''branch axil''' (PO#)
-* '''bract axil''' (PO#) (children of axil).
-* '''reproductive shoot system''' (PO:0025082): A shoot system in the sporophytic phase that has as part at least one sporangium.
+* columella PO:0025230
-* '''gynoecium ridge''' (PO:0025088): A gynoecium in the early stages of development, characterized as a ridge on the abaxial surface of the floral meristem that develops from a gynoecium primordium.
+* moss capsule columella PO:0025231
-* '''dehiscence zone''' (PO:0025092): A portion of plant tissue that is part of a plant structure and consists of a narrow band of cells that undergoes dehiscence upon maturation of the structure.
+* PO:0004540 was renamed fruit columella
-* '''primordium''' (PO:0025127)
-* '''phyllome primordium'''
-* '''root parenchyma''' (PO:0025095): A portion of parenchyma tissue that is part of a root system.
-* '''stele'''
+* canal  PO:0025132
-* '''shoot axis stele'''
+* petiole canal PO:0025133
-* '''branch stele'''
+* abaxial petiole canal PO:0025238
-* '''stem stele'''
+* adaxial petiole canal PO:0025239
-* '''sporangium (already there, but didn’t have definition),
-* '''microsporangium'''
-* '''megasporangium'''
-* pericarp vascular bundle
+* phyllome apex PO:0025139
+* phyllome base PO:0025140
+* phyllome tip PO:0025141
-* shoot system vascular system. Made different vascular systems of above ground parts child of this.
-* phyllome vascular system
+* valve PO:0025228
-* sepal vascular system
+* moss capsule valve PO:0025229
-* flower vascular system
+* PO:0000033 was renamed fruit valve
-* tepal vascular system new
 ==New terms- cells==
@@ Line 124: / Line 168: @@
 ==List of new terms: trichome, epidermis, and related==
-* '''trichome''' (PO:0000282) not new?
-* '''multicellular trichome'''
-* '''trichome cell'''
-* '''multicellular trichome branch'''
-* '''multicellular trichome branch cell''' (replaces trichome branch)
-* '''bract trichome'''
-* '''carpel trichome'''
-* '''stem trichome'''
-* '''branch trichome'''
-* '''phyllome trichome (PO:0025186)''' (parent to leaf trichome; existing?)
-* '''sepal trichome (PO:0025182)'''
-* '''petal trichome (PO:0025187)'''
-* '''tepal trichome (PO:0025188)'''
-* '''phyllome epidermis'''
-* '''stem epidermis'''
-* '''branch epidermis'''
-.
-* '''thorn'''
-* '''prickle''' (PO:0025169)
-* leaf prickle (PO:0025175)
-* root prickle (PO:0025170)
-* shoot axis prickle (PO:0025171)
-* '''spine'''
-id: PO:0025096
-name: carpel epidermis
-id: PO:0025097
-name: stamen epidermis
-id: PO:0025098
-name: bract trichome
-id: PO:0025135
-name: cigar leaf lamina abaxial epidermis
-id: PO:0025152
-name: peduncle epidermis
-id: PO:0025153
-name: peduncle trichome
+carpel epidermis PO:0025096
-id: PO:0025157
+stamen epidermis PO:0025097
-name: phyllome epidermis
-id: PO:0025158
+bract trichome PO:0025098
-name: bract epidermis
-id: PO:0025159
+cigar leaf lamina abaxial epidermis PO:0025135
-name: bract abaxial epidermis
-id: PO:0025160
+peduncle epidermis PO:0025152
-name: bract adaxial epidermis
+peduncle trichome PO:0025153
-id: PO:0025162
+phyllome epidermis PO:0025157
-name: multicellular trichome
-id: PO:0025163
+bract epidermis PO:0025158
-name: multicellular trichome branch cell
-id: PO:0025164
+bract abaxial epidermis PO:0025159
-name: root epidermal cell
-id: PO:0025165
+bract adaxial epidermis PO:0025160
-name: shoot epidermal cell
-id: PO:0025166
+multicellular trichome PO:0025162
-name: papilla cell
-id: PO:0025167
+multicellular trichome branch cell PO:0025163
-name: leaf papilla cell
-id: PO:0025168
+root epidermal cell PO:0025164
-name: stigma papilla cell
-id: PO:0025169
+shoot epidermal cell PO:0025165
-name: prickle
-id: PO:0025170
+papilla cell PO:0025166
-name: root prickle
-id: PO:0025171
+leaf papilla cell PO:0025167
-name: shoot axis prickle
-id: PO:0025172
+stigma papilla cell PO:0025168
-name: thorn
-id: PO:0025173
+prickle PO:0025169
-name: leaf spine
-id: PO:0025174
+root prickle PO:0025170
-name: stipule spine
-id: PO:0025175
+shoot axis prickle PO:0025171
-name: leaf prickle
-id: PO:0025176
+thorn PO:0025172
-name: stem trichome
-id: PO:0025177
+leaf spine PO:0025173
-name: branch trichome
-id: PO:0025178
+stipule spine PO:0025174
-name: stem epidermis
-id: PO:0025179
+leaf prickle PO:0025175
-name: branch epidermis
+stem trichome PO:0025176
-id: PO:0025182
+branch trichome PO:0025177
-name: sepal trichome
+stem epidermis PO:0025178
-id: PO:0025184
+branch epidermis PO:0025179
-name: tepal epidermis
+sepal trichome PO:0025182
-id: PO:0025186
+tepal epidermis PO:0025184
-name: phyllome trichome
-id: PO:0025187
+phyllome trichome PO:0025186
-name: petal trichome
-id: PO:0025188
+petal trichome PO:0025187
-name: tepal trichome
-id: PO:0025192
+tepal trichome PO:0025188
-name: tepal abaxial epidermis
-id: PO:0025193
+tepal abaxial epidermis PO:0025192
-name: tepal adaxial epidermis
+tepal adaxial epidermis PO:0025193
-id: PO:0025208
+carpel trichome PO:0025208
-name: carpel trichome
-id: PO:0025209
+stamen trichome PO:0025209
-name: stamen trichome
-id: PO:0025210
+leaf abaxial trichome PO:0025210
-name: leaf abaxial trichome
-id: PO:0025211
+leaf adaxial trichome PO:0025211
-name: leaf adaxial trichome
-id: PO:0025212
+leaf pavement cell PO:0025212
-name: leaf pavement cell
-id: PO:0025213
+leaf abaxial pavement cell PO:0025213
-name: leaf abaxial pavement cell
-id: PO:0025214
+leaf adaxial pavement cell PO:0025214
-name: leaf adaxial pavement cell
 ==new terms- elongation and differentiation zones:==
@@ Line 295: / Line 262: @@
 * plant axis elongation zone (PO:0025180)
-* root elongation zone (PO:0025181). Old term elongation zone (PO:0025181) was made obsolete, because definition of was incorrect.
+* root elongation zone (PO:0025181). Old term elongation zone (PO:0020125) was made obsolete, because definition of was incorrect.
 * lateral root elongation zone (PO:0025256) Old term lateral root elongation zone (PO:0003014) was made obsolete, because definition of was incorrect.
 * primary root elongation zone (PO:0025257) Old term primary root elongation zone (PO:0003003) was made obsolete, because definition of was incorrect.
@@ Line 303: / Line 270: @@
 ==List of Terms stomatal complex:==
-* stomatal complex
-* phyllome stomatal complex
-* leaf stomatal complex
-* petiole stomatal complex
-* leaf lamina stomatal complex
+phyllome stomatal complex PO:0025215
-* leaf lamina abaxial stomatal complex
-* leaf lamina adaxial stomatal complex
-* petiole abaxial stomatal complex
+leaf stomatal complex PO:0025183
-* petiole adaxial stomatal complex
-* root nodule meristem (PO:0025194): A root meristem that gives rise to a root nodule.
+leaf lamina stomatal complex PO:0025185
-* basal endosperm transfer layer (PO:0025196) (replaces PO:0009019, with same name): A portion of plant tissue that is part of an endosperm and is composed of basal endosperm transfer cells. [source:POC:rw]
-==List of Renamed Terms==
+petiole stomatal complex PO:0025189
-* secretory trichome was renamed glandular trichome
-* seed trichome was made the primary name for PO:0004511, (changed seed hair to exact synonym, added pubescence as related synonym)
+leaf abaxial stomatal complex PO:0025190
-* root differentiation zone (PO:0020135; renaming of old term differentiation zone)
-* valve (PO:0000033) was renaned fruit valve, with updated definition and new parent valve (PO:0025228).
+leaf adaxial stomatal complex PO:0025191
-* hull (PO:0006000) was renamed Poaceae hull to distinguish it from other types of hulls
-* old microsporangium (PO:0009070) was renamed pollen sac and made a child of new microsporangium (PO:0025202)
+bract stomatal complex PO:0025216
+carpel stomatal complex PO:0025217
+petal stomatal complex PO:0025218
+sepal stomatal complex PO:0025219
+stamen stomatal complex PO:0025220
-==List of replacement terms==
+tepal stomatal complex PO:0025221
-These terms were made obsolete and replaced by new terms with the same name but new definitions, because the old definitions were incorrect:
-elongation zone (PO:0020125) replaced by root elongation zone (PO:0025181)
-obsolete lateral root elongation zone (PO:0003014) replaced by lateral root elongation zone (PO:0025256)
+plus:
-obsolete primary root elongation zone (PO:0003003) replaced by primary root elongation zone (PO:0025257)
+phyllome stomatal pore PO:0025234
-obsolete basal endosperm transfer layer (PO:0009019) replaced by basal endosperm transfer layer (PO:0025196)
+leaf stomatal pore PO:0025235
 ==List of new terms in numerical order==
@@ Line 794: / Line 758: @@
 id: PO:0025240
-name: secondary inflorescence
+name: second order inflorescence
 id: PO:0025241