Difference between revisions of "PRO-PO-GO Meeting"
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The goals of this meeting are to enhance coordination in ontology development and use in relation to plant genomics, proteomics and related fields. THe meeting is designed: | The goals of this meeting are to enhance coordination in ontology development and use in relation to plant genomics, proteomics and related fields. THe meeting is designed: | ||
| − | *1. To inform members of the Protein, Plant | + | *1. To inform members of the Protein, Plant, Gene Ontology communities of developments in each of these ontologies, and in related ontologies such as the CL (Cell), TO (Plant Trait), ENVO (Environment), PATO (Phenotype) and IDO-Plant (Plant Infectious Disease) ontologies. Specifically: |
:a. To enhance the PO treatment of plant-related proteins | :a. To enhance the PO treatment of plant-related proteins | ||
:b. To address issues concerning reuse of GO terms to describe plant-related proteins, for example as concerns treatment of plant life cycle and development stages | :b. To address issues concerning reuse of GO terms to describe plant-related proteins, for example as concerns treatment of plant life cycle and development stages | ||
*2. To contribute to the [http://wiki.plantontology.org/index.php/The_cROP_(Common_Reference_Ontologies_for_Plants)_Initiative cROP] (Common Reference Ontologies for Plants) initiative | *2. To contribute to the [http://wiki.plantontology.org/index.php/The_cROP_(Common_Reference_Ontologies_for_Plants)_Initiative cROP] (Common Reference Ontologies for Plants) initiative | ||
| − | *3. To contribute to the ontological understanding of phenotype | + | *3. To contribute to the ontological understanding of phenotype and disease in all model organisms. |
*4. To identify potentially fruitful applications which enhanced ontology coordination might bring. | *4. To identify potentially fruitful applications which enhanced ontology coordination might bring. | ||
| Line 41: | Line 41: | ||
TAIR: | TAIR: | ||
:Tanya Berardini (Stanford) | :Tanya Berardini (Stanford) | ||
| + | |||
| + | Please contact [mailto:phismith@buffalo.edu | Barry Smith] for further information concerning participation in this meeting. | ||
*'''Sponsors''' | *'''Sponsors''' | ||
| + | |||
[http://www.plantontology.org/ The Plant Ontology] | [http://www.plantontology.org/ The Plant Ontology] | ||
| + | |||
[http://pir.georgetown.edu/pro/ The Protein Ontology] | [http://pir.georgetown.edu/pro/ The Protein Ontology] | ||
| + | |||
[http://bioontologies.org The National Center for Biomedical Ontology] | [http://bioontologies.org The National Center for Biomedical Ontology] | ||
| − | |||
| − | |||
Revision as of 15:43, 10 November 2012
Venue: Ramada Inn, Amherst, NY 14221
Date: May 15-16, 2013
Goals
The goals of this meeting are to enhance coordination in ontology development and use in relation to plant genomics, proteomics and related fields. THe meeting is designed:
- 1. To inform members of the Protein, Plant, Gene Ontology communities of developments in each of these ontologies, and in related ontologies such as the CL (Cell), TO (Plant Trait), ENVO (Environment), PATO (Phenotype) and IDO-Plant (Plant Infectious Disease) ontologies. Specifically:
- a. To enhance the PO treatment of plant-related proteins
- b. To address issues concerning reuse of GO terms to describe plant-related proteins, for example as concerns treatment of plant life cycle and development stages
- 2. To contribute to the cROP (Common Reference Ontologies for Plants) initiative
- 3. To contribute to the ontological understanding of phenotype and disease in all model organisms.
- 4. To identify potentially fruitful applications which enhanced ontology coordination might bring.
Participants will include:
PO Consortium
- Laurel Cooper (Oregon)
- Maria A. Gandolfo (Cornell)
- Pankaj Jaiswal (Oregon)
- Barry Smith (Buffalo)
GO Consortium
- Judith Blake (JAX)
- Jane Lomax (EBI)
- Chris Mungall (Berkeley)
PRO Consortium
- Cathy Wu (Delaware)
- Cecilia Arighi (Delaware)
- Darren Natale (Georgetown)
- Alan Ruttenberg (Buffalo)
Cell Ontology
- Alex Diehl (Buffalo)
CHEBI
- Janna Hastings (EBI, Geneva)
TAIR:
- Tanya Berardini (Stanford)
Please contact | Barry Smith for further information concerning participation in this meeting.
- Sponsors
