Difference between revisions of "PO-FNA Conf Call Nov 18th, 2011"
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Examples: | Examples: | ||
| − | FNA: | + | FNA:columella has two meanings. One maps to gynophore, the other maps to fruit columella |
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| − | + | FNA:ligule has 4 different meanings (3 structures and 1 character) | |
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| − | + | plus many others | |
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*how to handle FNA terms that map to >1 PO term? | *how to handle FNA terms that map to >1 PO term? | ||
| − | *how to map terms that are too general for PO (101 character terms) | + | Examples: |
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| + | FNA:apex matches to PO:bract apex, leaf apex, petal apex, petiole distal end, phyllome apex, reproductive shoot apex, sepal apex, shoot apex, tepal apex, vegetative shoot apex, bract apex, leaf apex, petal apex, petiole distal end, phyllome apex, reproductive shoot apex, sepal apex, shoot apex, tepal apex, vegetative shoot apex | ||
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| + | FNA:blade matches to PO:lamina and PO:leaf lamina | ||
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| + | *how to deal with maps to obsolete terms? | ||
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| + | Inlcudes duplicate plural forms, 5 unique: | ||
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| + | pyrene: obsolete. The hard inner portion of a drupe, consisting of osseous endocarp and included seed. | ||
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| + | coccus, cocci, mericarp: obsolete. One of the segments of a dehisced schizocarp; usually one-seeded and itself indehiscent. | ||
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| + | microphyll: obsolete (What about megaphyll? Currently mapped to vascular leaf.) | ||
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| + | mucros: obsolete. | ||
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| + | 3 have been replaced by GO terms: | ||
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| + | papilla, papipillae: map to obsolete PO:0020053. Could map to plant cell papilla (GO:0090395) or could be character term (papillate). | ||
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| + | wall: maps to obsolete pollen wall PO:0020059 now GO:0043667 (also maps to 6 other PO terms) | ||
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| + | *how to handle terms that are too general for PO (101 character terms)? | ||
==Phenotype/character terms form FNA== | ==Phenotype/character terms form FNA== | ||
*begin work on phenotype/character terms, inlcuding the 101 from this list plus all of the FNA character terms | *begin work on phenotype/character terms, inlcuding the 101 from this list plus all of the FNA character terms | ||
Revision as of 14:27, 14 November 2011
POC-FNA meeting, Webex Conference Call; Date: Monday Nov 14th, 2011 10am (PST)
Planned In attendance: Laurel Cooper (OSU), Pankaj Jaiswal (OSU), Ramona Walls (NYBG)
Collaborators: Hong Cui, James Macklin
Back to: Main Flora_of_North_America-_FNA page
Items for discussion:
PO-FNA mapping results - summary of the initial mapping efforts, plus suggestions on how to proceed.
Hong's file of "traits extracted from FNAv19": see xls file in email
RW: this appears to be an empty file. Can you please resend?
PO follow-up tasks
- add 364 synonyms to existing terms
- fix several errors that were discovered while doing the mappings
- add 143 unique new terms, plus their synonyms
-FNA provides definitions, so this will be relatively easy -A few of these are already on our list of terms to add, some from other users (e.g. phyloclade).
- create an official mapping file
Open questions
- need unique IDs for FNA terms, in order to deal with duplicates (multiple concepts with same name)
Examples:
FNA:columella has two meanings. One maps to gynophore, the other maps to fruit columella
FNA:ligule has 4 different meanings (3 structures and 1 character)
plus many others
- how to handle FNA terms that map to >1 PO term?
Examples:
FNA:apex matches to PO:bract apex, leaf apex, petal apex, petiole distal end, phyllome apex, reproductive shoot apex, sepal apex, shoot apex, tepal apex, vegetative shoot apex, bract apex, leaf apex, petal apex, petiole distal end, phyllome apex, reproductive shoot apex, sepal apex, shoot apex, tepal apex, vegetative shoot apex
FNA:blade matches to PO:lamina and PO:leaf lamina
- how to deal with maps to obsolete terms?
Inlcudes duplicate plural forms, 5 unique:
pyrene: obsolete. The hard inner portion of a drupe, consisting of osseous endocarp and included seed.
coccus, cocci, mericarp: obsolete. One of the segments of a dehisced schizocarp; usually one-seeded and itself indehiscent.
microphyll: obsolete (What about megaphyll? Currently mapped to vascular leaf.)
mucros: obsolete.
3 have been replaced by GO terms:
papilla, papipillae: map to obsolete PO:0020053. Could map to plant cell papilla (GO:0090395) or could be character term (papillate).
wall: maps to obsolete pollen wall PO:0020059 now GO:0043667 (also maps to 6 other PO terms)
- how to handle terms that are too general for PO (101 character terms)?
Phenotype/character terms form FNA
- begin work on phenotype/character terms, inlcuding the 101 from this list plus all of the FNA character terms
