Difference between revisions of "Release 20"
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- update translations synonyms- send to Ale and YY | - update translations synonyms- send to Ale and YY | ||
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| + | =Tabled for the next release:= | ||
| + | ==Continue revisions and adding new terms for wood ontology== | ||
| + | ''Most terms are in the PAE branch or for GO.'' | ||
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| + | ''Can continue to add annotations as we go along, as well.'' | ||
| + | ==Potato Annotations== | ||
| + | |||
| + | LC has been in contact with the group who published the [http://www.nature.com/nature/journal/v475/n7355/full/nature10158.html#/f4 potato genome paper] and they are interested in collaborating with us to assign ontology terms to the annotations. | ||
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| + | From Dr. Richard Finker (Wageningen, The Netherlands): | ||
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| + | "We are also interested to use trait ontologies to assist in candidate gene selection within regions of interest, I'm eager to discuss with you on the efforts of cross linking ontologies to biological relevant entities. e.g. a metabolite content trait to its e.g. chebi ontology ID, form which we could obtain info about the pathway." | ||
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| + | ''This will go in the next release, do they have expression data- RNA Seq?'' | ||
| + | |||
| + | ==Wood Annotations== | ||
| + | |||
| + | [http://dendrome.ucdavis.edu/treegenes/ TreeGenes] and [http://www.fagaceae.org/ Fagaceae Genomics Web] | ||
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| + | ==Annotations to soybean- [http://soybase.org/ SoyBase]== | ||
Revision as of 23:34, 16 December 2012
Goals and Timeline for the next Release #20
Timeline for Release: Goal is April 2013
See also:
To-do list for Release #20
- Update the webpages- which ones are top priority? See below
- move files to live tag, update /trunk/ontology/OBO_format/Readme.txt
- file naming and which variations of the file to create for each release - check with cjm
- update translations synonyms- send to Ale and YY
Tabled for the next release:
Continue revisions and adding new terms for wood ontology
Most terms are in the PAE branch or for GO.
Can continue to add annotations as we go along, as well.
Potato Annotations
LC has been in contact with the group who published the potato genome paper and they are interested in collaborating with us to assign ontology terms to the annotations.
From Dr. Richard Finker (Wageningen, The Netherlands):
"We are also interested to use trait ontologies to assist in candidate gene selection within regions of interest, I'm eager to discuss with you on the efforts of cross linking ontologies to biological relevant entities. e.g. a metabolite content trait to its e.g. chebi ontology ID, form which we could obtain info about the pathway."
This will go in the next release, do they have expression data- RNA Seq?
Wood Annotations
TreeGenes and Fagaceae Genomics Web
