Difference between revisions of "AgBase"
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=Adding annotations for seed trichome terms to describe the development of cotton fibers= | =Adding annotations for seed trichome terms to describe the development of cotton fibers= | ||
| + | |||
| + | * seed trichome (PO:0004511) | ||
| + | * petal (PO:0009032) | ||
| + | * root (PO:0009005) | ||
| + | * anther (PO:0009066) | ||
| + | * vascular leaf (PO:0009025) | ||
| + | |||
| + | |||
| + | *seed trichome development stage (PO:0025369) | ||
| + | *seed trichome elongation stage (PO:0025371) [38] | ||
| + | *seed trichome initiation stage PO:0025371 [17] | ||
| + | *seed trichome secondary wall biosynthesis stage (PO:0025372) [4] | ||
| + | |||
| + | |||
| + | * embryo stage (PO:0007631) | ||
| + | * endosperm development stages (PO:0007633) | ||
| + | * anther developmental stages (PO:0001004) | ||
| + | * leaf development stages (PO:0001050) | ||
| + | * root development stages (PO:0007520) | ||
| + | * petal differentiation and expansion stage (PO:0007611) | ||
=DbxRefs for Annotations= | =DbxRefs for Annotations= | ||
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database: AgBase | database: AgBase | ||
| − | object: Anything with a Uniprot Gene Name or GenBank ID | + | object: Anything with a Uniprot Gene Name or GenBank ID or GO ID |
| − | example_id: AgBase: | + | example_id: AgBase:Q8VWP8 |
generic_url: http://agbase.msstate.edu/index.html | generic_url: http://agbase.msstate.edu/index.html | ||
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url_example: http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB/TrEMBL&uid=Q8VWP8_GOSHI&gb_acc=Q8VWP8 | url_example: http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB/TrEMBL&uid=Q8VWP8_GOSHI&gb_acc=Q8VWP8 | ||
| + | |||
| + | |||
| + | [[Category:Collaborations]] | ||
Latest revision as of 09:18, 30 April 2012
Adding annotations for seed trichome terms to describe the development of cotton fibers
- seed trichome (PO:0004511)
- petal (PO:0009032)
- root (PO:0009005)
- anther (PO:0009066)
- vascular leaf (PO:0009025)
- seed trichome development stage (PO:0025369)
- seed trichome elongation stage (PO:0025371) [38]
- seed trichome initiation stage PO:0025371 [17]
- seed trichome secondary wall biosynthesis stage (PO:0025372) [4]
- embryo stage (PO:0007631)
- endosperm development stages (PO:0007633)
- anther developmental stages (PO:0001004)
- leaf development stages (PO:0001050)
- root development stages (PO:0007520)
- petal differentiation and expansion stage (PO:0007611)
DbxRefs for Annotations
Need to create stanza
maizeGDB example:
abbreviation: MaizeGDB
database: Maize Genetics and Genomics Database
object: Anything with a MaizeGDB Object ID Number or Gene Model Name
example_id: MaizeGDB:881225
generic_url: http://www.maizegdb.org/
url_syntax: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=[example_id]
url_example: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=881225
abbreviation: AgBase
database: AgBase
object: Anything with a Uniprot Gene Name or GenBank ID or GO ID
example_id: AgBase:Q8VWP8
generic_url: http://agbase.msstate.edu/index.html
url_syntax: http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB/TrEMBL&uid=[example_id]_GOSHI&gb_acc=[example_id]
