Details of Changes in PO Release 19
From Plant Ontology Wiki
Revision as of 19:49, 4 January 2013 by Cooperl (talk | contribs) (→Added PO IDs to the definitions of the following terms:)
See also New_terms_and_obsolete_terms_Release_19
Back to Release_19
Revised or Updated definitions and/or comments: PAE terms
- axillary shoot system (PO:0006343): A shoot-borne shoot system (PO:0004545) that develops_from an axillary bud (PO:0004709). (was develops_from a vegetative axillary bud)
- axillary reproductive bud (PO:0025072): An axillary bud (PO:0004709) that develops into an reproductive shoot system (PO:0025082).
- basal axillary shoot system (PO:0005001):An axillary shoot system (PO:0006343) that develops from an axillary vegetative bud (PO:0004712) that is part of a stem base (PO:0008039). (Needs further revision - Items_for_future_meetings page.
- axillary bud meristem (PO:0000232): A shoot meristem (PO:0006079) formed in an axil (PO:0025224)
- shoot system meristem (PO:0006079): A portion of meristem tissue (PO:0009013) that is part of a shoot system (PO:0009006).
- shoot apical meristem (PO:0020148): A shoot meristem (PO:0006079) formed at the apex of the shoot axis (PO:0025029), including those originating from an axillary bud meristem (PO:0000232).
- embryo sac egg cell (PO:0025123): A plant egg cell (PO:0020094) that is part of an egg apparatus (PO:0020096). Comment: The egg apparatus is part of an embryo sac (PO:0025074).
- embryo sac (PO:0025074): A megagametophyte (PO:0025279) that is located in a plant ovary ovule (PO:0025490). Comment: Produces an embryo sac egg cell (PO:0025123).
- embryo sac central cell (PO:0020090): An embryo sac cell (PO:0025026) that is largest cell in a mature embryo sac (PO:0025074).
- laticifer cell (PO:0025031): A ground tissue cell (PO:0025030) that contains latex. Comment: May be simple or branched.
- articulated laticifer cell (PO:0006221): A laticifer cell (PO:0025031) that is joined longitudinally to other articulated laticifer cells to form a tube.
- non-articulated laticifer cell (PO:0006222): A laticifer cell (PO:0025031) that is not joined longitudinally to other laticifer cells to form a tube.
- articulated laticifer (PO:0005008): A portion of secretory tissue (PO:0005656) that has as parts articulated laticifer cells (PO:0006221).
- pericarp and child terms exocarp, mesocarp, endocarp- Updated definitions:
- pericarp (PO:0009084): A portion of plant tissue (PO:0009007) that is the outer layer (wall) of a fruit (PO:0009001), and develops from a plant ovary (PO:0009072) or a carpel (PO:0009030) wall.Added comment: May be fleshy in fruits such as grape.
- exocarp (PO:0009085): A portion of plant tissue (PO:0009007) that is the outer layer of a pericarp (PO:0009084). Added fruit epidermis as a synonym.
- mesocarp (PO:0009087): A portion of plant tissue (PO:0009007) that is the middle layer of a pericarp (PO:0009084).
- endocarp (PO:0009086): A portion of plant tissue (PO:0009007) that is the innermost differentiated layer of a pericarp (PO:0009084).
- antheridiophore (PO:0030033): revised def'n: A stalk (PO:0025066) that supports an antheridium head (PO:0030075). Added relation has_part antheridium head (PO:0030075)
- archegoniophore (PO:0030034): revised def'n: A stalk (PO:0025066) that supports an archegonium head (PO:0030034). Added relation has_part archegonium head (PO:0030034)
- placenta (PO:0025078): made it broader (any interface between a gametophyte and a sporophyte with transfer cells)
- second order inflorescence (PO:0025240): fixed def'n: changed 'second order inflorescence branch' to 'second order inflorescence axis', because that is the correct term name.
- leaf sinus (PO:0025384): Added comment that it can be rounded or angled.
Modified relations, PAE
see also the notes above
- leaf develops_from vascular leaf primordium > vascular leaf develops_from vascular leaf primordium
- archegonium egg cell part_of archegonium > archegonium egg cell located_in archegonium
- petiole lamina (PO:0025129)is_a leaf lamina > petiole lamina is_a lamina
- lamina (PO:0025060) is_a cardinal organ part > lamina is_a cardinal part of multi-tissue plant structure, (to allow for lamina on seeds and fruits)
- tuber cortex (PO:0025055) is_a shoot axis cortex > tuber cortex is_a cortex
- tuber pith (PO:0025052) is_a shoot axis pith > tuber pith is_a pith
- tuber storage parenchyma (PO:0025036) part_of shoot axis tuber > tuber storage parenchyma part_of tuber (PO:0025522). Added comment: If you are annotating to this term, please add an additional annotation to either shoot axis tuber (PO:0004543) or tuberous root tuber (PO:0025476).
- Removed peduncle part_of inflorescence (incorrect relation, does not work for cases of single flowers)
New Relations- PAE:
- axillary shoot system (PO:0006343) develops_from axillary bud
- cardinal organ part is_a cardinal part of MTPS and part_of plant organ, (added cross product to definition)
- organ margin (PO:0025005) part_of organ lamina
- phyllome margin (PO:0025018) part_of phyllome lamina (latter as XP)
- laticiferous cell (PO:0004005, obsolete) replaced_by laticifer cell (PO:0025031)
- stele (PO:0025197) part_of plant axis (PO:0025004)
Updated definitions and/or comments: PSDS terms
- gametophyte development stage (PO:0028003): removed the phrase "or fertilization" from the definition, added PO ids. Added new sentence to comment.
- flower development stage (PO:0007615)
- fruit development stage (PO:0001002)-
- collective plant organ structure development stage (PO:0025338)- modified definition and comment to include PO:ids.
- whole plant fruit formation stage (PO:0007042)
- whole plant fruit ripening stage (PO:0007010)
- whole plant flowering stage (PO:0007016)
New or modified relations, PSDS
- Made fruit development stage is_a plant structure development stage (instead of collective plant organ structure development stage)
Added relation collective plant organ structure development stage has_participant collective plant organ structure, using intersection_of tags.
Made whole plant fruit formation stage (PO:0007042) and whole plant fruit ripening stage (PO:0007010) subclasses of whole plant fruit development stage and updated their definitions.
Updated names and definitions of:
- (PO:0007032) whole plant fruit formation stage up to 10%
- (PO:0007009) whole plant fruit formation stage 10 to 30%
- (PO:0007029) whole plant fruit formation stage 30 to 50%
- (PO:0007007) whole plant fruit formation stage 50 to 70%
- (PO:0007027) whole plant fruit formation stage 70% to final size
