Summary New TO Terms- Spring 2012
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New children of anatomy and morphology trait (TO:0000017)
shoot system anatomy and morphology trait (TO:0000077) and new child terms:
- inflorescence anatomy and morphology trait (TO:0000373) (existing)
Plant organ anatomy and morphology trait (TO:0000736) and child terms
- plant organ anatomy and morphology trait (TO:0000736): An anatomy and morphology trait (TO:0000017) which is associated with a plant organ (PO:0009008).
- plant axis anatomy and morphology trait (TO:0000738): plant organ anatomy and morphology trait (TO:0000736) which is associated a plant axis (PO:0025004).
- shoot axis anatomy and morphology trait (TO:0000739): A plant axis trait (TO:0000738) which is associated with a shoot axis (PO:0025029).
- peduncle anatomy and morphology trait (TO:0000776): A shoot axis anatomy and morphology trait (TO:0000739) which is associated with a peduncle (PO:0009053).
- peduncle waxiness (TO:0000777): A peduncle anatomy and morphology trait (TO:0000776) which is associated with a visual observation of the presence of cuticular wax (PO:0025386).
- peduncle length (TO:0002691): A peduncle anatomy and morphology trait (TO:0000776) which is associated with the length of a peduncle (PO:0009053). Refer to length (PATO:0000122)
- peduncle width (TO:0000649): A peduncle anatomy and morphology trait (TO:0000776) which is associated with the width of a peduncle (PO:0025386). Refer to width (PATO:0000921)
- peduncle top diameter (TO:0000546): A peduncle anatomy and morphology trait (TO:0000776) which is associated with the diameter at the tip of the peduncle (PO:0009053). Refer to diameter (PATO:0001334)
- branch anatomy and morphology trait (TO:0000740): A shoot axis anatomy and morphology trait (TO:0000739) which is associated with a branch (PO:0025073).
- tuber anatomy and morphology trait (TO:0000741): A branch anatomy and morphology trait (TO:0000740) which is associated with a tuber (PO:0004543).
- subterranean tuber anatomy and morphology trait (TO:0000742): A tuber anatomy and morphology trait (TO:0000741) which is associated with a subterranean tuber (PO:0004547).
- subterranean tuber shape (TO:0000743): A subterranean tuber anatomy and morphology trait (TO:0000742) which is associated with the shape of a subterranean tuber (PO:0004547)
- subterranean tuber size (TO:0000744): A subterranean tuber anatomy and morphology trait (TO:0000742) which is associated with the size of a subterranean tuber (PO:0004547).
- subterranean tuber appearance (TO:0000745): A subterranean tuber anatomy and morphology trait (TO:0000742) which is associated with the appearance of a subterranean tuber (PO:0004547).
- subterranean tuber mass (TO:0000746): A subterranean tuber anatomy and morphology trait (TO:0000742) which is associated with the mass of a subterranean tuber (PO:0004547).
- subterranean tuber anatomy and morphology trait (TO:0000742): A tuber anatomy and morphology trait (TO:0000741) which is associated with a subterranean tuber (PO:0004547).
- phyllome anatomy and morphology trait (TO:0000747): A plant organ anatomy and morphology trait (TO:0000736) which is associated with a phyllome (PO:0006001).
- leaf anatomy and morphology trait (TO:0000748): A phyllome anatomy and morphology trait (TO:0000747) which is associated with a leaf (PO:0025034).
- vascular leaf anatomy and morphology trait (TO:0000419):A leaf anatomy and morphology trait (TO:0000748) which is associated with a vascular leaf (PO:0009025).
- cotyledon anatomy and morphology trait (TO:0000749): A vascular leaf anatomy and morphology trait (TO:0000419) which is associated with a cotyledon (PO:0020030).
- seedling cotyledon anatomy and morphology trait (TO:0000774): A cotyledon anatomy and morphology trait (TO:0000749) which is associated with a seedling cotyledon (PO:0025471).
- seedling cotyledon color(TO:0000750): A seedling cotyledon anatomy and morphology trait (TO:0000774) which is associated with the color of a seedling cotyledon(PO:0025471).
- seedling cotyledon number (TO:0000751): A seedling cotyledon anatomy and morphology trait (TO:0000774) which is associated with the number of seedling cotyledons (PO:0025471).
- seedling cotyledon size (TO:0000752): A seedling cotyledon anatomy and morphology trait (TO:0000774) which is associated with the size of a seedling cotyledon(PO:0025471).
- embryo cotyledon anatomy and morphology trait (TO:0000775): A cotyledon anatomy and morphology trait (TO:0000749) which is associated with an embryo cotyledon (PO:0025470).
- seedling cotyledon anatomy and morphology trait (TO:0000774): A cotyledon anatomy and morphology trait (TO:0000749) which is associated with a seedling cotyledon (PO:0025471).
- cotyledon anatomy and morphology trait (TO:0000749): A vascular leaf anatomy and morphology trait (TO:0000419) which is associated with a cotyledon (PO:0020030).
- vascular leaf anatomy and morphology trait (TO:0000419):A leaf anatomy and morphology trait (TO:0000748) which is associated with a vascular leaf (PO:0009025).
- leaf anatomy and morphology trait (TO:0000748): A phyllome anatomy and morphology trait (TO:0000747) which is associated with a leaf (PO:0025034).
- coleoptile anatomy and morphology trait (TO:0000753) : A plant organ anatomy and morphology trait (TO:0000736) which is associated with a coleoptile (PO:0020033).
- coleoptile color (TO:0000244): A coleoptile anatomy and morphology trait (TO:0000753) which is associated with the color of a coleoptile (PO:0020033). refer to: color PATO:0000014
- coleoptile length (TO:0001007): A coleoptile anatomy and morphology trait (TO:0000753) which is associated with the length of a coleoptile (PO:0020033). refer to: length PATO:0000122
cardinal organ part (TO:0000754) and new child terms:
- cardinal organ part anatomy and morphology trait (TO:0000754): An anatomy and morphology trait (TO:0000017) which is associated with a cardinal organ part (PO:0025001).
- shoot internode anatomy and morphology trait (TO:0000755): A cardinal organ part anatomy and morphology trait (TO:0000754) which is associated with a shoot internode (PO:0005005).
- stem internode anatomy and morphology trait (TO:0000756): A shoot internode anatomy and morphology trait (TO:0000755) which is associated with a stem internode (PO:0020142).
- hypocotyl anatomy and morphology trait (TO:0000757): A stem internode anatomy and morphology trait (TO:0000756) which is associated with a hypocotyl (PO:0020100).
- seedling hypocotyl anatomy and morphology trait (TO:0000769):A hypocotyl anatomy and morphology trait (TO:0000757) which is associated with a seedling hypocotyl (PO:0025291).
- seedling hypocotyl color (TO:0000759): A seedling hypocotyl anatomy and morphology trait (TO:0000769) which is associated with the color of a hypocotyl (PO:0020100). Refer to color PATO:0000014
- seedling hypocotyl green (TO:0000760): A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color green (PATO:0000320). Refer to: color (PATO:0000014); green (PATO:0000320)
- seedling hypocotyl green with bronze band (TO:0000761): A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color green (PATO:0000320) with a bronze (PATO:0002363) band.
- seedling hypocotyl purple (TO:0000762): A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color purple (PATO:0000951). Refer to: color (PATO:0000014); purple: PATO:0000951
- seedling hypocotyl dark purple (TO:0000763): A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color dark purple (PATO:0001259). Refer to: color (PATO:0000014); dark purple: PATO:0001259
- seedling hypocotyl color (TO:0000759): A seedling hypocotyl anatomy and morphology trait (TO:0000769) which is associated with the color of a hypocotyl (PO:0020100). Refer to color PATO:0000014
- embryo hypocotyl anatomy and morphology trait (TO:0000771): A hypocotyl anatomy and morphology trait (TO:0000757) which is associated with an embryo hypocotyl (PO:0025290).
- hypocotyl length (TO:0006065): A hypocotyl anatomy and morphology trait (TO:0000757) which is associated with the length of a hypocotyl (PO:0020100). Refer to length PATO:0000122
- seedling hypocotyl anatomy and morphology trait (TO:0000769):A hypocotyl anatomy and morphology trait (TO:0000757) which is associated with a seedling hypocotyl (PO:0025291).
- mesocotyl anatomy and morphology trait (TO:0000758): A stem internode anatomy and morphology trait (TO:0000756) which is associated with a mesocotyl (PO:0020037).
- seedling mesocotyl anatomy and morphology trait (TO:0000772):A mesocotyl anatomy and morphology trait (TO:0000758) which is associated with an seedling mesocotyl (PO:0025295).
- embryo mesocotyl anatomy and morphology trait (TO:0000773): A mesocotyl anatomy and morphology trait (TO:0000758) which is associated with an embryo mesocotyl (PO:0025294).
- mesocotyl length (TO:0000544): A mesocotyl anatomy and morphology trait (TO:0000758) which is associated with the length of a mesocotyl (PO:0020037). Refer to length PATO:0000122
- hypocotyl anatomy and morphology trait (TO:0000757): A stem internode anatomy and morphology trait (TO:0000756) which is associated with a hypocotyl (PO:0020100).
- stem internode anatomy and morphology trait (TO:0000756): A shoot internode anatomy and morphology trait (TO:0000755) which is associated with a stem internode (PO:0020142).
- shoot internode anatomy and morphology trait (TO:0000755): A cardinal organ part anatomy and morphology trait (TO:0000754) which is associated with a shoot internode (PO:0005005).
- stalk anatomy and morphology trait (TO:0000764): A cardinal organ part anatomy and morphology trait (TO:0000754) which is associated with a stalk (PO:0025066).
- petiole anatomy and morphology trait (TO:0000765): A stalk anatomy and morphology trait (TO:0000764): which is associated with a petiole (PO:0020038).
- petiole length (TO:0000766): A petiole anatomy and morphology trait (TO:0000765)that is associated with the length of a petiole (PO:0020038). Refer to length PATO:0000122
- petiole shape(TO:0000767): A petiole anatomy and morphology trait (TO:0000765) that is associated with the shape of a petiole (PO:0020038). Refer to shape PATO:0000052
- petiole size (TO:0000768): A petiole anatomy and morphology trait (TO:0000765) that is associated with the size of a petiole (PO:0020038). Refer to size PATO:0000117
- petiole anatomy and morphology trait (TO:0000765): A stalk anatomy and morphology trait (TO:0000764): which is associated with a petiole (PO:0020038).
New stature or vigor traits (TO:0000133) added:
- plant aspect- made is_a stature or vigor trait (TO:0000133):
plant aspect: A stature or vigor trait (TO:0000133) that is a qualitative score of the visual appeal (ideotype) of the whole plant (PO:0000003).
New stress trait (TO:0000164) terms added:
bacterial blight disease resistance (TO:0000770): A bacterial disease resistance (TO:0000315) that resists bacterial blight disease.
Renamed and redefined terms:
- root term: plant trait (TO:0000387)- removed "ontology from name, defined based on entities and "
- anatomy and morphology trait (TO:0000017)- removed "related" from name and redefined.
- shoot system anatomy and morphology trait (TO:0000077)- was shoot anatomy and morphology trait
- mesocotyl length (TO:0000544): was a child of embryo development, embryo related trait and mesocotyl anatomy and morphology trait. Now is only a child of mesocotyl anatomy and morphology trait.
- seedling hypocotyl anatomy and morphology trait (TO:0000769): new child of hypocotyl anatomy and morphology trait.
- blast disease resistance:
Redefined terms:
plant color (TO:0000708): new def: A stature and vigor trait (TO:0000133) which is associated with the color of a whole plant (PO:0000003). Refer to color PATO:0000014.
plant height (TO:0000207): new def: A stature and vigor trait (To:0000133) which is associated with the height of a whole plant (PO:0000003). Refer to height PATO:0000119.
These are ones that kept their original names
