POC Outreach Events

Presentations and Posters

Year 2011

• PO presentation for Moss 2011: Moss 2011 Meeting- PO presentation Sept 12, 2011

• Submission for Plant Genome Awardee meeting in Sept, 2011 Media:2-pager_plant_ontology-2011.pdf

*ASPB Plant Biology meeting 2011 Plant Biology 2011 Outreach Booth

• International Botanical Congress (IBC2011), July 23rd – 30th 2011

Symposium hosted: Bio-Ontologies for the Plant Sciences under the genetics, genomics and bioinformatics theme.

Please see the IBC 2011 Bio-Ontologies Symposium wiki page for more details.

Press release about the PO at IBC 2011: Media:IBC_2011_Congress_News_Thursday_28_July_WEB.pdf‎

* International Conference on Biomedical Ontologies IBCO 2011 LC co-organized the session on "From Fins to Limbs to Leaves: Facilitating Anatomy Ontology Interoperability" and presented a flash talk "The Plant Ontology: Development of a Reference Ontology for all Plants"

LC also presented the PO in the OBO Foundry session as part of the application for OBO Foundry Membership

• Phenotype RCN Meeting Durham, NC

• Plant and Animal Genome XIX Conference, San Diego, CA. January 15-19, 2011

Laurel Cooper, Ramona Walls, Justin Preece and Dennis Wm Stevenson will present a poster and a computer demo.

Laurel Cooper took part in the Plant Phenotypes workshop and panel discussion

PO Collaborators workshop; Sunday, Jan 16th.

• PAG 2011 Collaborators Workshop
• IBC_2011_Bio-Ontologies_Symposium
• Plant Ontology Webinar- May 2011 release

Year 2010

• NETTAB 2010 conference on Biological Wikis, Nov 29-Dec 1, 2010, Naples, Italy

Justin Preece will present the poster: A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species" File:NETTAB 2010 poster proposal.pdf

• Seminar, Department of Botany and Plant Pathology, Oregon State University

Laurel presented a seminar: Bridging Plant Anatomy and Genomics in the Digital Era: Recent Advances at The Plant Ontology File:Cooper BPP final (LC 10-14-10).pdf

• Seminar, New York Botanical Garden. October 6, 2010. Ramona Walls presented a seminar 'Plant Ontology: A tool for structural, developmental and molecular plant biologists'

• American Society of Plant Biologists, Quebec, Montreal, Canada. Jul. 31 - Aug. 4, 2010

Laurel Cooper and Pankaj Jaiswal attended. Laurel presented a poster:The Plant Ontology: A Database for Plant Genomics.

Cooper, L., Elser, J., Walls, R., Stevenson, Dennis W., Smith, B., Mungall, C. J., Gandolfo, M. A., and Jaiswal, P. (2010). The Plant Ontology: A Database for Plant Genomics. American Society of Plant Biologists, Quebec, Montreal, Canada

We also organized a Plant Biology 2010 Outreach Booth: Plant Genome Resources Outreach Booth.

• PO-Gramene Annotation Workshop at Plant Biology 2010 PO-Gramene Annotation Workshop

A workshop to demonstrate the Phenote Annotation Tool was held at the ASPB Plant Biology Meeting in Montreal, Quebec, Canada.

You can find a link to the workshop page at: Phenote Workshop

• Botany 2010, Providence, RI. Jul. 31 - Aug. 4, 2010. Dennis Stevenson, Alejandra Gandolfo, and Ramona Walls attended.

Ramona Walls gave a presentation for the Developmental and Structural Section Abstract-BSA2010 File:Presentation-BSA2010.pdf

Walls, R., Cooper, L., Elser, J., Stevenson Dennis W., Smith, B., Mungall, C. J., Gandolfo, M. A., and Jaiswal, P. (2010). The Plant Ontology: a tool for structural, developmental, and molecular plant biologists. Providence, RI.

• Bio-Ontologies 2010: Semantic Applications in Life Sciences July 9th-10th, 2010

Laurel Cooper and Ramona Walls attended and presented a poster and a one page write-up that was presented as a 'flash update talk'

File:PO Poster BioOntologies2010.pdf

File:PO FlashTalk BioOntologies2010.pdf

File:Walls Cooper BioOntologies29.pdf

Walls, R., Cooper, L., Elser, J., Dennis W. Stevenson, Mungall, C. J., Gandolfo, M. A., and Jaiswal, P. (2010). The Plant Ontology: A Common Reference Ontology for Plants. Boston, MA.

• Cell Ontology Workshop,Jackson Laboratory, Bar Harbor, Mass. May 18th-19th, 2010

Laurel Cooper and Ramona Walls attended and Laurel presented a talk "Introduction to the Plant Ontology™"

• Plant and Animal Genome XVIII Conference, San Diego, CA. Jan. 9-13, 2010

Laurel Cooper and Justin Elser Poster and Computer Demonstration

Elser, J., Cooper, L., and Jaiswal, P. (2010). Plant Ontology: Databases And Applications. San Diego, CA.

Year 2009

• GCP Ontology Workshop Rome, Italy, April 20-22, 2009
  • Chih-Wei Tung, Gave a talk on "Plant and Trait Ontology"

• 3rd International Biocuration Conference Berlin, Germany, April 16-19, 2009
  • Chih-Wei Tung, POC poster presentation

• Plant & Animal Genome Conference San Diego, Jan 10-14, 2009
  • Chih-Wei Tung, POC poster presentation

Year 2008

• MetaCyc database workshop Ithaca, Oct 21, 2008
  • Chih-Wei Tung, present a talk "An Introduction to the Plant Ontology Database "
• Plant & Animal Genome Conference San Diego, Jan 12, 2008
  • Chih-Wei Tung, POC poster presentation

Year 2007

• ASPB 2007 Chicago, July 7-11, 2007
  • Chih-Wei Tung, presentation, poster abstract
    

• RCN Plant and Trait Ontology Workshop, CSHL, NY, June 10-11
  • Doreen Ware, Pankaj Jaiswal, Shuly Avraham, Chih-Wei Tung
    

• AGRONOMICS workshop " Ontologies, Standards and Best Practices", Gent, Belgium, May 21-23
  • Chih-Wei Tung, presentation

• ITMI Israel, April 16-20, 2007
  • Shuly Avraham, poster

• PAG XV CA, January 13-17, 2007
  • Chih-Wei Tung, poster abstract

Year 2006

• PAG XIV Ontology Workshop (2006): Ontologies for Databases
  • Anuradha Pujar: Development of a generic plant growth stage ontology
  • Katica Ilic: Application of plant ontologies

Year 2005

• PAG XIII Ontology Workshop (2005): Development and Implementation of Ontologies in the Database
  • Leonore Reiser: Using the Plant Ontologies
  • Katica Ilic: Controlled vocabularies for describing and cmparing phenotypes and gene expression
    
  • Pankaj: posters

• The 16th International Conference on Arabidopsis Research, Madison, WI, June 18, 2005
  • Katica Ilic and Leonore presentations
  • Poster

• The 8th Annual Bio-Ontologies Meeting at the ISMB, June 24, 2005
  • Pankaj Jaiswal, presentation

• The 47th Maize Genetic Conference, WI, March 2005 Poster

• Frontiers in Plant Biology, MO, April 2005 Poster

• The XVII International Botanical Congress, Vienna, Austria, July, 2005. Felipe, poster

Year 2004

• Annotation Demo, 04/07/2004
• Botany 2004, Abstract #347 (Toby.ppt) and #351 (Felipe.ppt)
• ASPB 2004, FL, July, Abstract #864, Poster (KI), Workshop (PJ and LR)
• PAG XII 2004, CA, January, Abstract # 927, Poster (Pankaj), abstract

Year 2002

• PAG X Bioinformatics: Database
  • Leszek Vincent: The POC and Plant ontologies (poster)
  • Leszek Vincent: The POC and Plant ontologies - silk purpose from a maize ear (workshop: ontology)