Adding Physcomitrella annotations to PO terms: PO-Physco Webex Meeting July 18th, 2011

Webex Conference Call; Date: Tuesday Monday July 18th, 2011, 11am PDT/2 pm EDT/8pm Germany

In attendance: POC: Laurel Cooper (OSU), Ramona Walls (NYBG), Pankaj Jaiswal (OSU)

Collaborators: Stefan Rensing and Daniel Lang (absent) of the Physcomitrella group, University of Freiburg, Germany Cosmoss Moss Ontology

Note: Actual meeting starts at about 20 mins into the recording

Summary:

- PJ reviewed the important details about how the annotation files are prepared and uploaded to our SVN

Discussion points:

-microarray data cut-off points, based on established protocols. Reference page or published reference

-primary identifier should probably be gene locus id, transcript- something that is stable and can be used across multiple resources

-Separate file are required for the PO and GO annotations

-Separate PO file for anatomy terms and stages

-PO can host the GO annotation files as well (combined MF, BP, CC) in the new directory being developed

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-Once the data is in the ontology, we can start to look at gene expression comparison between homologous structures for inclusion in the paper

Others?

Link to annotation file format info: Assoc files and for the GAF 2.0 format.

PO and Cosmoss will try to coordinate a time for a live webex demo for the Moss 2011 meeting Sept 12-14th (Monday through Weds). Must be between 9am-noon and 1pm-3pm European Summer time. LC will look into possible times.

Others?