POC Conf. Call 3-15-11
POC meeting, Webex Conference Call; Date: Tuesday Mar 15th, 2011 10am (PST)
In attendance:
POC members:
Absent:
Collaborators:
Acceptance of the minutes from the POC_Conf._Call_3-8-11?
Issues arising from last week's meeting:
Physcomitrella terms
Gametangium, antheridium, archegonium
May want to use the name plant gametangium, to make it clear that we are not including algae.
Proposed definitions:
Plant gametangium: A cardinal organ part (?) that is part of a whole plant in the gametophytic phase and produces gametes.
(need to distinguish this from embryo sac somehow)
Antheridium: A gametangium that produces antheridium sperm cells.
Archegonium: A gametangium that produces archegonium egg cells.
We also have the terms:
archegonium egg cell (PO:0025122): An egg cell that is produced by an archegonium.
embryo sac egg cell (PO:0025123): An egg cell that is produced by a megagametophyte.
apical cell
Moss Ontology has requested the term apical cell.
We already have the term apical cell (PO:0004000), which is an embryonic cell: "An embryonic plant cell that is the uppermost cell formed after the first division of the zygote." Suggest renaming PO:0004000 "embryonic apical cell" for clarity. The embryonic apical cell can also be found in non-angiosperms.
Growth in mosses (and other bryophytes and ferns) results from divisions of a single apical cell. Branches or leaves form from division and differentiation of sub-apical cells. The moss apical meristem may differ from that of vascular plants, but it is still possible to call it an apical meristem.
Apical cell is consistent with the definition of meristematic cell (synthesizing protoplasm and producing new cells by division and with only a primary cell wall). Meristematic cell is part_of meristem, and a meristem is a portion of tissue and therefore two or more cells. We do not need to add apical cell part of apical meristem, but logically it will be part of a meristem.
Proposed def. of apical cell: A meristematic cell at the apex of a gametophore or non-vascular leaf (phyllid).
Comment: Occurs in mosses and other bryophytes. Does it also occur in ferns? Need to read up on this.
Collective plant structures:
gametophore
Def'n supplied by Moss Ontology: The leafy moss plant. The gametophore is the adult form of the moss gametophyte and bearer of the sex organs (gametangia). Ref: Reski (1998): Development, genetics and molecular biology of mosses. Botanica Acta 111, 1-15.
Suggest is_a shoot system.
Proposed def'n.: A shoot system that consists of the shoot axes and non-vascular leaves of a plant in the gametophytic phase. participates_in gametophytic phase
Comment: A gametophore is the leafy part of a moss gametophyte, without the protonema. Antheridia and archegonia arise on the gametophore.
gametophore bud
The term "bud" has been requested: Def'n supplied by Moss Ontology: A structure produced by a caulonema and able to develop into a gametophore or a stem that includes an apical cell able to develop into a gametophore. The earliest recognizable stage of gametophore development. Ref: Bill and Nancy Malcolm (2006): Mosses and other Bryophytes, an illustrated glossary, second edition and altered by David Cove
Suggest a new term gametophore bud. This could be a child of bud (PO:0000055: An undeveloped shoot system).
Proposed def'n: A bud on a protonema that develops into a gametophore. participates_in gametophytic phase
Comment: Occurs in mosses.
Plant organs:
cauloid
- This is the term used for the gametophore stem or axis.
Suggest using gametophore axis as primary name, cauloid as synonym.
Proposed def'n: A plant axis that is part of a gametophore. is_a plant axis, part_of gametophore, participates_in gametophytic phase
Synonyms: cauloid, gametophyte axis
Also suggest adding terms for gametophore stem and gametophore branch (similar to stem and branch).
perigonial bract
- The specialized phyllids surrounding the antheridia.
Ref: Bill and Nancy Malcolm (2006): Mosses and other Bryophytes, an illustrated glossary, second edition (MO definition)
A bract (PO:0009055) is defined as: A phyllome, usually different in form from the foliage leaves, subtending a reproductive structure. [source: POC:curators] Comment: Often used to refer to what is called here floral bract.
Proposed def'n: A bract that subtends an antheridium. part_of gametophore, participates in gametophytic phase
Comment: When an antheridium occurs on a specialized lateral branch of the gametophore, all of the phyllomes on that branch are usually perigonial bracts. If an antheridium occurs on a main axis of the gametophore, usually only the terminal phyllomes are perigonial bracts.
Additional moss terms:
These were not requested by the Physcomitrella group, but they are related to the terms above and are commonly used to describe mosses, so we may as well add them now.
perichaetal bract
Proposed def'n: A bract that subtends and archegonium. part_of gametophore, participates_in gametophytic phase.
Comment: When an archegonium occurs on a specialized lateral branch of the gametophore, all of the phyllomes on that branch are usually parichaetal bracts. If an archegonium occurs on a main axis of the gametophore, only the terminal phyllomes are usually parichaetal bracts. The two or three terminal-most perichaetal bracts may fuse to form a gametophytic perianth.
gametophytic perianth
Proposed def'n: A collective phyllome structure that consists of two or more of the most distal parachaetal bracts on an axis that are fused laterally and surround the calyptra.
Should it be surrounds the capsule, in case no calyptra is present?
-has_part parachaetal bract, part_of gametophore, participates_in gametophytic phase, disjoint from perianth (PO:0009058)
Comment: The gametophytic perianth is not the same structure as a perianth (PO:0009058) in angiosperms.
seta
-The stalk of a moss sporophyte.
Suggested def'n: A plant axis that that holds up a spore capsule. participates_in sporophytic phase
Cardinal organ parts
Terms requested by MO:
calyptra
base
peristome
theca
lid
foot
neck canal
Other terms, not from MO
epiphram
spore capsule mouth
pseudopodium
venter
