Botany 2012 PO workshop planning page

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This page is for internal use, for preparing for the PO workshop at the Botany 2012 meeting.

For a description of the workshop, see Plant Ontology Workshop, Botany 2012.

Topics

  • Introductions of presenters and participants
    • determine participants' needs and interests
  • Brief introduction to the principles and content of the PO.
  • Tutorial on how to access the various resources available through the PO website:
    • how to navigate the website
    • how to interpret an ontology (including relations, definitions, and external references)
    • how to browse or search for ontology terms or annotations
    • how to submit feedback (including requests for new terms or revised definitions)
    • how to download and work with ontology and annotation files.
  • Discussion of ontology terms and definitions
  • Supplemental: Instruction will be available on how to generate association files for genomic projects interested in contributing and maintaining new PO annotations.

Agenda

This will be flexible, depending on participant's needs.

9:00 - 9:30 Introductions and assessing needs and interests of participants

9:30 - 10:00 Introduction to ontologies and to the PO

10:00 - 10:45 Hands-on tutorials

How to navigate the PO website:

  • browse - tree view, graph view, icons, annotation data
  • search - for terms, for annotations, advanced search
  • downloading and working with files - ontology file and annotation file (only if people want to be able to do this)

10:45 - 11:00 Break and re-assessment of needs

11:00 - 11:30 PO and images

  • CUPAC images and PO terms
  • SIA demonstration

11:30 - 11:50

11:30 - 11:50 Flexible time

Will continue hands-on tutorials if needed, or have a discussion of ontology terms

11:50 - 12:00 Wrap up

Links