New terms and obsolete terms for May2011 release
New terms added
week of 02/02/2011
PO:0000062 stomatal initial (stomatal meristermoid, stomatal initial cell)
PO:0025258 procambial cell
PO:0025259 leaf procambium
PO:0025260 shoot axis procambium
PO:0000063 leaf procambial cell
PO:0025261 pericycle cell
PO:0000064 xylem pole pericycle cell
PO:0000065 phloem pole pericycle cell
week of 02/09/2011
PO:0025262 ovary septum
PO:0025263 locule
PO:0025265 sporangium locule
PO:0025264 anther locule
PO:0025266 ovary locule
PO:0025267 fruit replum
PO:0025268 fruit septum
PO:0025269 collective organ part structure
week of 02/16/2011
PO:0025270 fruit locule
PO:0025271 spore capsule locule
PO:0025272 ovary replum
PO:0025273 stem procambium
PO:0025274 branch procambium
week of 02/23/2011
PO:0025275 procambium
PO:0025276 shoot procambium
PO:0025277 pollen sac
PO:0025278 rhizome scale leaf
week of 3/8/11
PO:0030001 chloronema cell
PO:0030002 caulonema cell
PO:0030003 protonema
PO:0030004 chloronema
PO:0030005 caulonema
PO:0030006 protonema phase
Terms made obsolete
PO:0005009 carpel septum, consider ovary septum (PO:0025262) or replum (PO:0005016)
PO:0005008 obsolete fruit septum, consider fruit septum (PO:0025268) or fruit replum (PO:0025267)
--the two terms above were made obsolete because their definitions we ambiguous, and they had annotations from Arabidopsis that should have been on replum.
PO:0005016 replum, consider ovary replum (PO:0025272) and fruit replum (PO:0025267). TAIR should check existing annotation to see where they should go.
PO:0006074 obsolete procambium, replaced_by procambium (PO:0025275)
PO:0006306 obsolete shoot procambium, replaced_by procambium (PO:0025276)
PO:0009070 obsolete pollen sac, replaced_by pollen sac (PO:0025277)
Merged terms
meristemoid (PO:0000070) was merged into intial cell (PO:0004011)
fruit aleurone layer (PO:0008004) was merged into aleurone layer (PO:0005360). Removed part_of fruit relation, because it was redundant with part_of endosperm relation.
Merged moss capsule (PO:0025232) into sporangium (PO:0025094). Added spore capsule as exact synonym.
Merged spore capsule locule (PO:0025271) into sporangium locule (PO:0025265).
Other
TAIR should move annotations that were on PO:0005009 (carpel septum) to PO:0025272 (ovary replum). Should check if annotation from PO:0005016 (replum) belong with ovary replum (PO:0025272) or fruit replum (PO:0025267).
Changed primary name of bud scale (PO:0020054) to bud scale leaf.
Added "leaf, vascular" and "scale-like leaf" as synonyms of vascular leaf.
Removed modified aleurone part_of aleurone layer, because it was already is_a aleurone layer.
Added Spanish synonyms for plant cell and plant embryo, but accented characters don't display properly in Amigo.
Added "portion of … tissue" as synonyms to several tissue types of tissue that had single word names (like epidermis, collenchyma).
Changed names of child terms of sporangium/spore capsule:
PO:0025093 Moss capsule annulus>spore capsule annulus
PO:0025231 Moss capsule columella>spore capsule columella
PO:0025229 Moss capsule valve>spore capsule valve
Added anther lobe as narrow synonym of pollen sac. Was there on the old term, but didn’t get transferred when it was obsoleted and replaced.
Made theca is_a collective organ part structure, part of anther, has_part pollen sac.
Made microsporocyte part of microsporangium, instead of part of microsporocyte. Made sporocyte part of sporangium.
Added synonyms to vascular leaf (frond, needle-like leaf) and non-vascular leaf (phyllid, gametophyll, gametophytic leaf).
Moved juvenile, transition and adult leaf from vascular leaf to leaf. Also simple leaf and compound leaf.
Moved leaf aerenchyma, leaf mesophyll, leaf lamina, leaf margin, leaf intercalary meristem and leaf sheath from part_of vascular leaf to part_of leaf.
