Oryza sativa LCM Aya et al, 2011
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Revision as of 07:24, 27 December 2012 by Cooperl (talk | contribs) (moved Rice LCM Aya etal to Rice LCM Aya et al, 2011)
Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays.
Legends:
- Gene ID: RAP-japan/IRGSP rice gene locus ID
- Cultivar: Nipponbare
- Gene data: Derived from supplementary tables ST2-ST25
- PO:annotations: best match to the sample description in the following tables. If required the PO annotations to growth stages were done to #both the organ/structure specific development stages and the whole plant growth stages. Every sample has PO whole plant growth stage #annotations.
PO anatomy and growth stage annotations table:
| Sample ID | Dataset | Anatomy PO ID | growth stage PO ID | growth stage PO ID | ' | comments |
| Anther at premeiosis stage, replicate 1_LMD sample | Pre_anther | PO:0009066 | PO:0001004 | PO:0007130 | ||
| Anther_0.3-0.6 mm | Anther_0.3-0.6 mm | PO:0009066 | PO:0001004 | PO:0007130 | ||
| Anther_0.7-1.0 mm | Anther_0.7-1.0 mm | PO:0009066 | PO:0001004 | PO:0007130 | ||
| Anther_1.2-1.5 mm | Anther_1.2-1.5 mm | PO:0009066 | PO:0001004 | PO:0007130 | ||
| Anther_1.6-2.0 mm | Anther_1.6-2.0 mm | PO:0009066 | PO:0001004 | PO:0007130 | ||
| Embryo_07 DAF | Embryo_07 DAF | PO:0009009 | PO:0001095 | PO:0007042 | At 5 DAP embryo differentiating the first leaf primordium | |
| Embryo_10 DAF | Embryo_10 DAF | PO:0009009 | PO:0001081 | PO:0007042 | Morphologically completed 10 DAP embryo | |
| Embryo_14 DAF | Embryo_14 DAF | PO:0009009 | PO:0001081 | PO:0007042 | milk stage | |
| Embryo_28 DAF | Embryo_28 DAF | PO:0009009 | PO:0001081 | PO:0007010 | dough | |
| Embryo_42 DAF | Embryo_42 DAF | PO:0009009 | PO:0001081 | PO:0007050 | ||
| Endosperm_07 DAF | Endosperm_07 DAF | PO:0009089 | PO:0007633 | PO:0007042 | ||
| Endosperm_10 DAF | Endosperm_10 DAF | PO:0009089 | PO:0007633 | PO:0007042 | ||
| Endosperm_14 DAF | Endosperm_14 DAF | PO:0009089 | PO:0007633 | PO:0007042 | ||
| Endosperm_28 DAF | Endosperm_28 DAF | PO:0009089 | PO:0007633 | PO:0007010 | ||
| Endosperm_42 DAF | Endosperm_42 DAF | PO:0009089 | PO:0007633 | PO:0007050 | ||
| Inflorescence_0.6-1.0 mm | Inflorescence_0.6-1.0 mm | PO:0009049 | PO:0001083 | PO:0007006 | ||
| Inflorescence_3.0-4.0 mm | Inflorescence_3.0-4.0 mm | PO:0009049 | PO:0001083 | PO:0007006 | ||
| Inflorescence_5.0-10.0 mm | Inflorescence_5.0-10 mm | PO:0009049 | PO:0001083 | PO:0007006 | ||
| Leaf blade_reproductive_00:00 | LeafBlade_76DAT_24:00 | PO:0020039 | - | PO:0007130 | ||
| Leaf blade_reproductive_12:00 | LeafBlade_76DAT_12:00 | PO:0020039 | - | PO:0007130 | ||
| Leaf blade_ripening_00:00 | LeafBlade_125DAT_24:00 | PO:0020039 | - | PO:0007010 | ||
| Leaf blade_ripening_12:00 | LeafBlade_125DAT_12:00 | PO:0020039 | - | PO:0007010 | ||
| Leaf blade_vegetative_00:00 | LeafBlade_27DAT_24:00 | PO:0020039 | - | PO:0007134 | ||
| Leaf blade_vegetative_12:00 | LeafBlade_27DAT_12:00 | PO:0020039 | - | PO:0007134 | ||
| Leaf sheath_reproductive_00:00 | LeafSheath_76DAT_24:00 | PO:0020104 | - | PO:0007130 | ||
| Leaf sheath_reproductive_12:00 | LeafSheath_76DAT_12:00 | PO:0020104 | - | PO:0007130 | ||
| Leaf sheath_vegetative_00:00 | LeafSheath_27DAT_24:00 | PO:0020104 | - | PO:0007134 | ||
| Leaf sheath_vegetative_12:00 | LeafSheath_27DAT_12:00 | PO:0020104 | - | PO:0007134 | ||
| Lemma_1.5-2.0 mm floret | Lemma_1.5-2.0 mm floret | PO:0009037 | PO:0001047 | PO:0007130 | ||
| Lemma_4.0-5.0 mm floret | Lemma_4.0-5.0 mm floret | PO:0009037 | PO:0001047 | PO:0007130 | ||
| Lemma_7.0 mm floret | Lemma_7.0 mm floret | PO:0009037 | PO:0001047 | PO:0007130 | ||
| Microspore at meiosis stage, replicate 1_LMD sample | MEI-microspore | PO:0020048 | PO:0001009 | PO:0007130 | ||
| Microspore at tetrad stage, replicate 1_LMD sample | TET-microspore | PO:0000032 | PO:0001029 | PO:0007130 | ||
| Microspore at uninuclear stage, replicate 1_LMD sample | UN-microspore | PO:0020048 | PO:0001013 | PO:0007130 | ||
| Ovary_01 DAF | Ovary_01 DAF | PO:0009072 | - | PO:0007042 | ||
| Ovary_03 DAF | Ovary_03 DAF | PO:0009072 | - | PO:0007042 | ||
| Ovary_05 DAF | Ovary_05 DAF | PO:0009072 | - | PO:0007042 | ||
| Ovary_07 DAF | Ovary_07 DAF | PO:0009072 | - | PO:0007042 | ||
| Palea_1.5-2.0 mm floret | Palea_1.5-2.0 mm floret | PO:0009038 | PO:0001048 | PO:0007130 | ||
| Palea_4.0-5.0 mm floret | Palea_4.0-5.0 mm floret | PO:0009038 | PO:0001048 | PO:0007130 | ||
| Palea_7.0 mm floret | Palea_7.0 mm floret | PO:0009038 | PO:0001048 | PO:0007130 | ||
| Pistil_10-14 cm panicle | Pistil_10-14 cm inflorescence | PO:0009030 | PO:0007606 | PO:0007130 | ||
| Pistil_14-18 cm panicle | Pistil_14-18 cm inflorescence | PO:0009030 | PO:0007606 | PO:0007130 | ||
| Pistil_5-10 cm panicle | Pistil_05-10 cm inflorescence | PO:0009030 | PO:0007606 | PO:0007130 | ||
| Pollen at bicelluar stage, replicate 1_LMD sample | BC-pollen | PO:0025281 | PO:0001059 | PO:0007130 | ||
| Pollen at tricelluar stage, replicate 1_LMD sample | TC-pollen | PO:0025281 | PO:0001015 | PO:0007130 | ||
| Root_reproductive_00:00 | Root_76DAT_24:00 | PO:0009005 | - | PO:0007130 | ||
| Root_reproductive_12:00 | Root_76DAT_12:00 | PO:0009005 | - | PO:0007130 | ||
| Root_vegetative_00:00 | Root_27DAT_24:00 | PO:0009005 | - | PO:0007134 | ||
| Root_vegetative_12:00 | Root_27DAT_12:00 | PO:0009005 | - | PO:0007134 | ||
| Stem_reproductive_00:00 | Stem_83DAT_24:00 | PO:0009047 | - | PO:0007130 | ||
| Stem_reproductive_12:00 | Stem_83DAT_12:00 | PO:0009047 | - | PO:0007130 | ||
| Stem_ripening_00:00 | Stem_90DAT_24:00 | PO:0009047 | PO:0007010 | PO:0007010 | ||
| Stem_ripening_12:00 | Stem_90DAT_12:00 | PO:0009047 | PO:0007010 | PO:0007010 | ||
| Tapetum at meiosis stage, replicate 1_LMD sample | MEI-tapetum | PO:0009071 | PO:0001009 | PO:0007130 | ||
| Tapetum at tetrad stage, replicate 1_LMD sample | TET-tapetum | PO:0009071 | PO:0001029 | PO:0007130 | ||
| Tapetum at uninuclear stage, replicate 1_LMD sample | UN-tapetum | PO:0009071 | PO:0001013 | PO:0007130 | ||
=====
Table S1 from [Aya et al.http://www.ncbi.nlm.nih.gov/pubmed/22046259] with GEO IDs of the 176 microarray profiles used the study.
| GEO_ID | DATA SET ID | SAMPLE ID | CULTIVATOR |
| GSM534579 | LeafBlade_27DAT_12:00_rep1 | Leaf blade_vegetative_12:00* | Nipponbare |
| GSM534580 | LeafBlade_27DAT_12:00_rep2 | Nipponbare | |
| GSM534581 | LeafBlade_27DAT_12:00_rep3 | Nipponbare | |
| GSM534582 | LeafBlade_27DAT_24:00_rep1 | Leaf blade_vegetative_00:00 | Nipponbare |
| GSM534583 | LeafBlade_27DAT_24:00_rep2 | Nipponbare | |
| GSM534584 | LeafBlade_27DAT_24:00_rep3 | Nipponbare | |
| GSM534585 | LeafBlade_76DAT_12:00_rep1 | Leaf blade_reproductive_12:00 | Nipponbare |
| GSM534586 | LeafBlade_76DAT_12:00_rep2 | Nipponbare | |
| GSM534587 | LeafBlade_76DAT_12:00_rep3 | Nipponbare | |
| GSM534588 | LeafBlade_76DAT_24:00_rep1 | Leaf blade_reproductive_00:00 | Nipponbare |
| GSM534589 | LeafBlade_76DAT_24:00_rep2 | Nipponbare | |
| GSM534590 | LeafBlade_76DAT_24:00_rep3 | Nipponbare | |
| GSM534591 | LeafBlade_125DAT_12:00_rep1 | Leaf blade_ripening_12:00 | Nipponbare |
| GSM534592 | LeafBlade_125DAT_12:00_rep2 | Nipponbare | |
| GSM534593 | LeafBlade_125DAT_12:00_rep3 | Nipponbare | |
| GSM534594 | LeafBlade_125DAT_24:00_rep1 | Leaf blade_ripening_00:00 | Nipponbare |
| GSM534595 | LeafBlade_125DAT_24:00_rep2 | Nipponbare | |
| GSM534596 | LeafBlade_125DAT_24:00_rep3 | Nipponbare | |
| GSM534597 | LeafSheath_27DAT_12:00_rep1 | Leaf sheath_vegetative_12:00* | Nipponbare |
| GSM534598 | LeafSheath_27DAT_12:00_rep2 | Nipponbare | |
| GSM534599 | LeafSheath_27DAT_12:00_rep3 | Nipponbare | |
| GSM534600 | LeafSheath_27DAT_24:00_rep1 | Leaf sheath_vegetative_00:00 | Nipponbare |
| GSM534601 | LeafSheath_27DAT_24:00_rep2 | Nipponbare | |
| GSM534602 | LeafSheath_27DAT_24:00_rep3 | Nipponbare | |
| GSM534603 | LeafSheath_76DAT_12:00_rep1 | Leaf sheath_reproductive_12:00 | Nipponbare |
| GSM534604 | LeafSheath_76DAT_12:00_rep2 | Nipponbare | |
| GSM534605 | LeafSheath_76DAT_12:00_rep3 | Nipponbare | |
| GSM534606 | LeafSheath_76DAT_24:00_rep1 | Leaf sheath_reproductive_00:00 | Nipponbare |
| GSM534607 | LeafSheath_76DAT_24:00_rep2 | Nipponbare | |
| GSM534608 | LeafSheath_76DAT_24:00_rep3 | Nipponbare | |
| GSM534609 | Root_27DAT_12:00_rep1 | Root_vegetative_12:00* | Nipponbare |
| GSM534610 | Root_27DAT_12:00_rep2 | Nipponbare | |
| GSM534611 | Root_27DAT_12:00_rep3 | Nipponbare | |
| GSM534612 | Root_27DAT_24:00_rep1 | Root_vegetative_00:00 | Nipponbare |
| GSM534613 | Root_27DAT_24:00_rep2 | Nipponbare | |
| GSM534614 | Root_27DAT_24:00_rep3 | Nipponbare | |
| GSM534615 | Root_76DAT_12:00_rep1 | Root_reproductive_12:00 | Nipponbare |
| GSM534616 | Root_76DAT_12:00_rep2 | Nipponbare | |
| GSM534617 | Root_76DAT_12:00_rep3 | Nipponbare | |
| GSM534618 | Root_76DAT_24:00_rep1 | Root_reproductive_00:00 | Nipponbare |
| GSM534619 | Root_76DAT_24:00_rep2 | Nipponbare | |
| GSM534620 | Root_76DAT_24:00_rep3 | Nipponbare | |
| GSM534621 | Stem_83DAT_12:00_rep1 | Stem_reproductive_12:00* | Nipponbare |
| GSM534622 | Stem_83DAT_12:00_rep2 | Nipponbare | |
| GSM534623 | Stem_83DAT_12:00_rep3 | Nipponbare | |
| GSM534624 | Stem_83DAT_24:00_rep1 | Stem_reproductive_00:00 | Nipponbare |
| GSM534625 | Stem_83DAT_24:00_rep2 | Nipponbare | |
| GSM534626 | Stem_83DAT_24:00_rep3 | Nipponbare | |
| GSM534627 | Stem_90DAT_12:00_rep1 | Stem_ripening_12:00 | Nipponbare |
| GSM534628 | Stem_90DAT_12:00_rep2 | Nipponbare | |
| GSM534629 | Stem_90DAT_12:00_rep3 | Nipponbare | |
| GSM534630 | Stem_90DAT_24:00_rep1 | Stem_ripening_00:00 | Nipponbare |
| GSM534631 | Stem_90DAT_24:00_rep2 | Nipponbare | |
| GSM534632 | Stem_90DAT_24:00_rep3 | Nipponbare | |
| GSM534633 | Inflorescence_0.6-1.0 mm_rep1 | Inflorescence_0.6-1.0 mm* | Nipponbare |
| GSM534634 | Inflorescence_0.6-1.0 mm_rep2 | Nipponbare | |
| GSM534635 | Inflorescence_0.6-1.0 mm_rep3 | Nipponbare | |
| GSM534636 | Inflorescence_3.0-4.0 mm_rep1 | Inflorescence_3.0-4.0 mm | Nipponbare |
| GSM534637 | Inflorescence_3.0-4.0 mm_rep2 | Nipponbare | |
| GSM534638 | Inflorescence_3.0-4.0 mm_rep3 | Nipponbare | |
| GSM534639 | Inflorescence_5.0-10 mm_rep1 | Inflorescence_5.0-10.0 mm | Nipponbare |
| GSM534640 | Inflorescence_5.0-10 mm_rep2 | Nipponbare | |
| GSM534641 | Inflorescence_5.0-10 mm_rep3 | Nipponbare | |
| GSM534642 | Anther_0.3-0.6 mm_rep1 | Anther_0.3-0.6 mm* | Nipponbare |
| GSM534643 | Anther_0.3-0.6 mm_rep2 | Nipponbare | |
| GSM534644 | Anther_0.7-1.0 mm_rep1 | Anther_0.7-1.0 mm* | Nipponbare |
| GSM534645 | Anther_0.7-1.0 mm_rep2 | Nipponbare | |
| GSM534646 | Anther_0.7-1.0 mm_rep3 | Nipponbare | |
| GSM534647 | Anther_1.2-1.5 mm_rep1 | Anther_1.2-1.5 mm* | Nipponbare |
| GSM534648 | Anther_1.2-1.5 mm_rep2 | Nipponbare | |
| GSM534649 | Anther_1.2-1.5 mm_rep3 | Nipponbare | |
| GSM534650 | Anther_1.6-2.0 mm_rep1 | Anther_1.6-2.0 mm* | Nipponbare |
| GSM534651 | Anther_1.6-2.0 mm_rep2 | Nipponbare | |
| GSM534652 | Anther_1.6-2.0 mm_rep3 | Nipponbare | |
| GSM534653 | Pistil_05-10 cm inflorescence_rep1 | Pistil_5-10 cm panicle* | Nipponbare |
| GSM534654 | Pistil_05-10 cm inflorescence_rep2 | Nipponbare | |
| GSM534655 | Pistil_05-10 cm inflorescence_rep3 | Nipponbare | |
| GSM534656 | Pistil_10-14 cm inflorescence_rep1 | Pistil_10-14 cm panicle | Nipponbare |
| GSM534657 | Pistil_10-14 cm inflorescence_rep2 | Nipponbare | |
| GSM534658 | Pistil_10-14 cm inflorescence_rep3 | Nipponbare | |
| GSM534659 | Pistil_14-18 cm inflorescence_rep1 | Pistil_14-18 cm panicle | Nipponbare |
| GSM534660 | Pistil_14-18 cm inflorescence_rep2 | Nipponbare | |
| GSM534661 | Pistil_14-18 cm inflorescence_rep3 | Nipponbare | |
| GSM534662 | Lemma_1.5-2.0 mm floret_rep1 | Lemma_1.5-2.0 mm floret* | Nipponbare |
| GSM534663 | Lemma_1.5-2.0 mm floret_rep2 | Nipponbare | |
| GSM534664 | Lemma_1.5-2.0 mm floret_rep3 | Nipponbare | |
| GSM534665 | Palea_1.5-2.0 mm floret_rep1 | Palea_1.5-2.0 mm floret* | Nipponbare |
| GSM534666 | Palea_1.5-2.0 mm floret_rep2 | Nipponbare | |
| GSM534667 | Palea_1.5-2.0 mm floret_rep3 | Nipponbare | |
| GSM534668 | Lemma_4.0-5.0 mm floret_rep1 | Lemma_4.0-5.0 mm floret | Nipponbare |
| GSM534669 | Lemma_4.0-5.0 mm floret_rep2 | Nipponbare | |
| GSM534670 | Lemma_4.0-5.0 mm floret_rep3 | Nipponbare | |
| GSM534671 | Palea_4.0-5.0 mm floret_rep1 | Palea_4.0-5.0 mm floret | Nipponbare |
| GSM534672 | Palea_4.0-5.0 mm floret_rep2 | Nipponbare | |
| GSM534673 | Palea_4.0-5.0 mm floret_rep3 | Nipponbare | |
| GSM534674 | Lemma_7.0 mm floret_rep1 | Lemma_7.0 mm floret | Nipponbare |
| GSM534675 | Lemma_7.0 mm floret_rep2 | Nipponbare | |
| GSM534676 | Lemma_7.0 mm floret_rep3 | Nipponbare | |
| GSM534677 | Palea_7.0 mm floret_rep1 | Palea_7.0 mm floret | Nipponbare |
| GSM534678 | Palea_7.0 mm floret_rep2 | Nipponbare | |
| GSM534679 | Palea_7.0 mm floret_rep3 | Nipponbare | |
| GSM534680 | Ovary_01 DAF_rep1 | Ovary_01 DAF* | Nipponbare |
| GSM534681 | Ovary_01 DAF_rep2 | Nipponbare | |
| GSM534682 | Ovary_01 DAF_rep3 | Nipponbare | |
| GSM534683 | Ovary_03 DAF_rep1 | Ovary_03 DAF | Nipponbare |
| GSM534685 | Ovary_03 DAF_rep2 | Nipponbare | |
| GSM534686 | Ovary_03 DAF_rep3 | Nipponbare | |
| GSM534687 | Ovary_05 DAF_rep1 | Ovary_05DAF | Nipponbare |
| GSM534688 | Ovary_05 DAF_rep2 | Nipponbare | |
| GSM534689 | Ovary_05 DAF_rep3 | Nipponbare | |
| GSM534690 | Ovary_07 DAF_rep1 | Ovary_07 DAF | Nipponbare |
| GSM534691 | Ovary_07 DAF_rep2 | Nipponbare | |
| GSM534692 | Ovary_07 DAF_rep3 | Nipponbare | |
| GSM534693 | Embryo_07 DAF_rep1 | Embryo_07 DAF* | Nipponbare |
| GSM534694 | Embryo_07 DAF_rep2 | Nipponbare | |
| GSM534695 | Embryo_07 DAF_rep3 | Nipponbare | |
| GSM534696 | Embryo_10 DAF_rep1 | Embryo_10 DAF | Nipponbare |
| GSM534697 | Embryo_10 DAF_rep2 | Nipponbare | |
| GSM534698 | Embryo_10 DAF_rep3 | Nipponbare | |
| GSM534699 | Embryo_14 DAF_rep1 | Embryo_14 DAF | Nipponbare |
| GSM534700 | Embryo_14 DAF_rep2 | Nipponbare | |
| GSM534701 | Embryo_14 DAF_rep3 | Nipponbare | |
| GSM534702 | Embryo_28 DAF_rep1 | Embryo_28 DAF | Nipponbare |
| GSM534703 | Embryo_28 DAF_rep2 | Nipponbare | |
| GSM534704 | Embryo_28 DAF_rep3 | Nipponbare | |
| GSM534705 | Embryo_42 DAF_rep1 | Embryo_42 DAF | Nipponbare |
| GSM534706 | Embryo_42 DAF_rep2 | Nipponbare | |
| GSM534707 | Embryo_42 DAF_rep3 | Nipponbare | |
| GSM534708 | Endosperm_07 DAF_rep1 | Endosperm_07 DAF* | Nipponbare |
| GSM534709 | Endosperm_07 DAF_rep2 | Nipponbare | |
| GSM534710 | Endosperm_07 DAF_rep3 | Nipponbare | |
| GSM534711 | Endosperm_10 DAF_rep1 | Endosperm_10 DAF | Nipponbare |
| GSM534712 | Endosperm_10 DAF_rep2 | Nipponbare | |
| GSM534713 | Endosperm_10 DAF_rep3 | Nipponbare | |
| GSM534714 | Endosperm_14 DAF_rep1 | Endosperm_14 DAF | Nipponbare |
| GSM534715 | Endosperm_14 DAF_rep2 | Nipponbare | |
| GSM534716 | Endosperm_14 DAF_rep3 | Nipponbare | |
| GSM534717 | Endosperm_28 DAF_rep1 | Endosperm_28 DAF | Nipponbare |
| GSM534718 | Endosperm_28 DAF_rep2 | Nipponbare | |
| GSM534719 | Endosperm_28 DAF_rep3 | Nipponbare | |
| GSM534720 | Endosperm_42 DAF_rep1 | Endosperm_42 DAF | Nipponbare |
| GSM534721 | Endosperm_42 DAF_rep2 | Nipponbare | |
| GSM534722 | Endosperm_42 DAF_rep3 | Nipponbare | |
| GSM722590 | Pre_anther_rep1 | Anther at premeiosis stage, LMD sample* | Nipponbare |
| GSM722591 | Pre_anther_rep2 | Nipponbare | |
| GSM722592 | Pre_anther_rep3 | Nipponbare | |
| GSM722593 | MEI-microspore-rep1 | Microspore at meiosis stage, LMD sample* | Nipponbare |
| GSM722594 | MEI-microspore-rep2 | Nipponbare | |
| GSM722595 | MEI-microspore-rep3 | Nipponbare | |
| GSM722596 | MEI-microspore-rep4 | Nipponbare | |
| GSM722597 | TET-microspore-rep1 | Microspore at tetrad stage, LMD sample* | Nipponbare |
| GSM722598 | TET-microspore-rep2 | Nipponbare | |
| GSM722599 | TET-microspore-rep3 | Nipponbare | |
| GSM722600 | UN-microspore-rep1 | Microspore at uninuclear stage, LMD sample* | Nipponbare |
| GSM722601 | UN-microspore-rep2 | Nipponbare | |
| GSM722602 | UN-microspore-rep3 | Nipponbare | |
| GSM722603 | BC-pollen-rep1 | Pollen at bicelluar stage,LMD sample* | Nipponbare |
| GSM722604 | BC-pollen-rep2 | Nipponbare | |
| GSM722605 | BC-pollen-rep3 | Nipponbare | |
| GSM722606 | BC-pollen-rep4 | Nipponbare | |
| GSM722607 | BC-pollen-rep5 | Nipponbare | |
| GSM722608 | BC-pollen-rep6 | Nipponbare | |
| GSM722609 | BC-pollen-rep7 | Nipponbare | |
| GSM722610 | BC-pollen-rep8 | Nipponbare | |
| GSM722611 | TC-pollen-rep1 | Pollen at tricelluar stage, LMD sample* | Nipponbare |
| GSM722612 | TC-pollen-rep2 | Nipponbare | |
| GSM722613 | TC-pollen-rep3 | Nipponbare | |
| GSM722614 | MEI-tapetum-rep1 | Tapetum at meiosis stage, LMD sample* | Nipponbare |
| GSM722615 | MEI-tapetum-rep2 | Nipponbare | |
| GSM722616 | MEI-tapetum-rep3 | Nipponbare | |
| GSM722617 | TET-tapetum-rep1 | Tapetum at tetrad stage, LMD sample* | Nipponbare |
| GSM722618 | TET-tapetum-rep2 | Nipponbare | |
| GSM722619 | TET-tapetum-rep3 | Nipponbare | |
| GSM722620 | UN-tapetum-rep1 | Tapetum at uninuclear stage, LMD sample* | Nipponbare |
| GSM722621 | UN-tapetum-rep2 | Nipponbare | |
| GSM722622 | UN-tapetum-rep3 | Nipponbare | |
