Crop Plant Trait Ontology Workshop Agenda

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Dates: Sept 13-15th, 2012 (Thursday through Saturday)

Location: Oregon State University

Weds Sept. 12th, 6-8pm

Dinner at a local venue for those who arrive early

Snack and refreshments will be available at Finley Hall or Arnold dining center will be open until 7pm

Thursday Sept. 13th- 8am to 9pm

Location: CH2M Hill Alumni Center Williamette Room

  • 8:00- 9am Continental Breakfast in Williamette Room
  • 9:00- 9:15 Welcome and Introductions of the organizing Committee - Pankaj Jaiswal, OSU
  • 9:15- 9:30 Ruth Bastow: Insights and follow-up from EBI Crop Ontology Meeting
  • 9:30- 10:00 The Plant Ontology and the Trait Ontology- Laurel Cooper, OSU
  • 10:00- 10:30 Biological examples and ontology applications; Pankaj Jaiswal, OSU
  • 10:30- 10:45 Coffee break
  • 10:45- 11:00 Elizabeth Arnaud, Bioversity /GCP
  • 11:00- 11:15 Naama Menda- Sol Genomics Network
  • 11:15- 11:30 Rex Nelson- SoyBase
  • 11:30- 11:45 Mary Schaeffer- MaizeGDB
  • 11:45- 12:00- open time for questions and discussion
  • 12:00- 1:00pm Lunch
* 1:00- 1:30 Melissa Haendel; Ontology 101 (tenative)
  • 1:30- 1:40 Bob Benson, Syngenta traits
  • 1:40- 1:50 Ken McNally, IRRI
  • 1:50- 2:00 Cyril Pommier, INRA France; Ephesis
  • 2:00- 2:10 Victoria Carollo,USDA, ARS, CA GrainGenes
  • 2:10- 2:20- John Doonan, UK Phenomics Center
  • 2:20- 2:30- Dan Bolser, EBI, Ensemble, potato genomics
  • 2:30- 2:40 Jacques Legouis; Wheat trait lists INRA, France
  • 2:40- 3:00 coffee break
  • 3:00- 3:10- Pawel Krajewski, transPLANT
  • 3:10- 3:20 Sonia Dias- Trait Information Portal, PGR secure
  • 3:20- 3:30 Iain Donnison- Miscanthus
  • 3:30- 3:40
  • 3:40- 3:50 Sunita Kumari, Kbase
  • 4:00- 4:15 Luke Ramsay, Barley traits
  • 4:15- 4:30 Reinhard Simon, CIP
  • 4:30- 4:45
  • 4:45-5:00- C Tom Hash


Laurent DeLuc

Sharon

  • 5-6 break
  • 6:00- 7pm dinner
  • 7 to 8 Hands on training on ontology editing using OBO-edit

Friday Sept 14th- all day

9am Intro to Annotations and Data


10 Webex presentation Barry Smith; Ontology site, Department of Philosophy site


breakout groups

12:30 Lunch

breakout groups report on progress


breakout groups

breakout groups report on progress

dinner

Sat Sept. 15th- 8am to 12 noon

breakout groups report on progress- present project ideas?

Summary and conclusions

Wrap and to-do lists for follow-up

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