Crop Plant Trait Ontology Workshop Agenda

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Dates: Sept 13-15th, 2012 (Thursday through Saturday)

Location: Oregon State University

Weds Sept. 12th, 6-8pm

Dinner at a local venue for those who arrive early

Snack and refreshments will be available at Finley Hall or Arnold dining center will be open until 7pm

Thursday Sept. 13th- 8am to 9pm

Location: CH2M Hill Alumni Center Williamette Room

  • 8am- 9am Continental Breakfast
  • 9-9:15am Welcome and Introductions of the organizing Committee - Pankaj Jaiswal, OSU
  • 9:15am- 9:30am Ruth Bastow: Insights and follow-up from EBI Crop Ontology Meeting
  • 9:30-10 Intro to the PO and the TO- Laurel Cooper
  • 10:30- 10:45 Coffee break
  • 10:45-11:15 Biological examples and ontology Applications
  • 11:15- 11:30 Naama Menda- Sol Genomics
  • 11:30-11:45- Rex Nelson- SoyBase
  • 11:45-12- Mary Schaeffer- MaizeGDB
  • 12:00-1:00pm Lunch
  • 1-1:20 Melissa Haendel Ontology 101
  • 1:20-1:40 Bob Benson or Sharon Lewis; Syngenta trait
  • 1:40-2:00 Ken McNally, IRRI
  • 2:00-2:15- Elizabeth Arnaud, Bioversity /GCP
  • 2:15-2:30- John Doonan, UK Phenomics Center
  • 2:30-2:45- Dan Bolser, EBI, Ensemble, potato genomics
  • 2:45-3:00 coffee break
  • 3:00-3:15- Pawel K, transPLant
  • 3:15-3:30 Sonia Dias- Trait Information Portal, PGR secure
  • 3:30-3:45 Iain Donnison- Miscanthus
  • 3:45-4:00 Sunita Kumari, Kbase
  • 4:00-4:15 Luke Ramsay, Barley traits
  • 4:15-4:30 Reinhard Simon, CIP
  • 4:30- 4:45
  • 4:45-5:00- C Tom Hash

Cyril Jacques Victoria Jacques

  • 5-6 break
  • 6:00- 7pm dinner
  • 7 to 8 Hands on training on ontology editing using OBO-edit

Friday Sept 14th- all day

Intro to Annotations and Data


Webex presentation Barry Smith; Ontology site, Department of Philosophy site

Work on Goal 3 as a group

breakout groups

Lunch

breakout groups report on progress

Work on Goal 4 as a group

breakout groups

breakout groups report on progress

dinner

Sat Sept. 15th- 8am to 12 noon

breakout groups report on progress- present project ideas?

Summary and conclusions

Wrap and to-do lists for follow-up

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