Difference between revisions of "PAG 2011 Collaborators Workshop"
| Line 28: | Line 28: | ||
'''List of Speakers and Topics: Talks will be followed by time for discussion and networking lunch''' | '''List of Speakers and Topics: Talks will be followed by time for discussion and networking lunch''' | ||
| − | *'''10: | + | *'''10:35am: Ramona Walls, Plant Ontology Consortium''' |
Title: "Introduction to the Plant Ontology- Where does my project fit in?" | Title: "Introduction to the Plant Ontology- Where does my project fit in?" | ||
| − | *'''10: | + | *'''10:40am: Mary Schaeffer, [http://www.maizegdb.org/ MaizeGDB]''' |
Title: Plant Ontology and the Maize B73 Gene Atlas Wisconsin 2010 | Title: Plant Ontology and the Maize B73 Gene Atlas Wisconsin 2010 | ||
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| − | *''' | + | *'''10:55am: Claude dePamphilis [http://www.floralgenome.org/ Floral Genome Project],''' |
Title: TBA | Title: TBA | ||
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| − | *'''11: | + | *'''11:10am: Stefan Rensing, [http://www.cosmoss.org/ ''Physcomitrella patens'' Resource]''' |
Title: "MO - moss/bryophyte ontology within PO" | Title: "MO - moss/bryophyte ontology within PO" | ||
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| − | * '''11: | + | * '''11:25am: Nick Provart [http://bar.utoronto.ca/ BAR]''' |
Title: “Identification of Expressologs in Plant Species using Gene Expression Compendia” | Title: “Identification of Expressologs in Plant Species using Gene Expression Compendia” | ||
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| − | *'''11: | + | *'''11:40am: Ken McNally IRRI [http://beta.irri.org/index.php/Home/Welcome/Frontpage.html IRRI] ''' |
Title: "Ontological Implications from Sequencing the Global Rice Collections" | Title: "Ontological Implications from Sequencing the Global Rice Collections" | ||
Revision as of 23:47, 11 January 2011
Date and Time:
Sunday, January 16th, Late Morning to include a buffet lunch
Time: 10:30-1:00 pm (will wrap up in time to get to 1:30 sessions)
Where: Town and Country Hotel, Hampton Room
Link to Registration Site and Survey:
Please visit the site and register so we know how many are coming for lunch.
Summary and Objectives:
- We will have 5 speakers from groups who are current or potential collaborators
- The goal is to show a range of uses and highlight the utility of the Plant Ontology to the plant science community.
- Each speaker will have about 10-15 minutes, including time for questions, (~ 5-10 slides)
- We will have a 'working lunch' where folks can mingle and continue discussions
Agenda:
10:30am: Welcome and Opening
Laurel Cooper, Coordinator, Plant Ontology Consortium
List of Speakers and Topics: Talks will be followed by time for discussion and networking lunch
- 10:35am: Ramona Walls, Plant Ontology Consortium
Title: "Introduction to the Plant Ontology- Where does my project fit in?"
- 10:40am: Mary Schaeffer, MaizeGDB
Title: Plant Ontology and the Maize B73 Gene Atlas Wisconsin 2010
Summary: The Plant Ontology is being utilized as MaizeGBD develops a Maize Gene Atlas. They are working on a large set of Nimblegen and RNA_Seq expression data, from 61 tissues, at various plant growth stages. These data will be added to the Plant Ontology's existing annotations.
- 10:55am: Claude dePamphilis Floral Genome Project,
Title: TBA
Summary: An overview of the Floral Genome and Ancestral Angiosperm Genome Projects where they have been collecting 'immense Next Gen transcriptome datasets of several basal angiosperms'. A look at the specific issues that basal angiosperms raise for PO.
- 11:10am: Stefan Rensing, Physcomitrella patens Resource
Title: "MO - moss/bryophyte ontology within PO"
Summary: Stefan's group is developing a moss ontology. He will tell us about how they are developing the PO to MO mappings and annotating the Physcomitrella genome and transcriptome.
- 11:25am: Nick Provart BAR
Title: “Identification of Expressologs in Plant Species using Gene Expression Compendia”
- 11:40am: Ken McNally IRRI IRRI
Title: "Ontological Implications from Sequencing the Global Rice Collections"
Summary: Sequencing of genetic resource accessions in Rice. They are characterizing the 120,000 rice accessions (both genotypic and phenotypic diversity).
12:55am: Closing Comments and Summary
Pankaj Jaiswal, Plant Ontology Consortium
Build-Your-Own Sandwich Buffet Lunch
- Soup du Jour
- Sandwich Buffet:
Selection of Sliced Meats and Cheeses
Assorted Freshly Baked Deli Breads
Condiments to include leaf lettuce, sliced tomatoes, onions, mayonnaise and mustards
Crisp potato chips
- Salad Selections:
Red Potato Salad
Pasta Salad Primavera
Marinated Tomatoes and Cucumbers
Variety of Seasonal Greens with Choice of Dressings
- Deserts:
Assorted whole fresh fruits
Chef's Sweets Table
- Freshly brewed coffee, decaffeinated coffee and tea
