Difference between revisions of "List of useful Datasets"
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[http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2009.04100.x/full Wang et al, 2010] | [http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2009.04100.x/full Wang et al, 2010] | ||
| − | * | + | *[http://www.affymetrix.com/browse/products.jsp?productId=131497&navMode=34000&navAction=jump&aId=productsNav#1_1 Affymetrics GeneChip® Rice Genome Array ] |
| + | -contains 57,381 probe sets in total, of which 1347 represent 1260 transcripts of an indica variety and 54 168 represent 48 564 transcripts of a japonica variety. | ||
| + | |||
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*39 tissues/organs from throughout the plant life cycle, two ''indica'' varieties; Zhenshan 97 and Minghui 63. | *39 tissues/organs from throughout the plant life cycle, two ''indica'' varieties; Zhenshan 97 and Minghui 63. | ||
See also http://ricearray.org/index.shtml | See also http://ricearray.org/index.shtml | ||
Revision as of 23:04, 17 November 2010
Organisms: High quality sources only:
Arabidopsis thaliana source expts:
- AG 8K array, 90 expts
NASC (72), GEO (18)
- ATH1: 22K array: 5760 expts
-Gruissem lab (18), NSAC (326), FGCZ (55), GEO (2731), ArrayExpress (1679), AtGenExpress (876), TAIR (38), other (37)
Oryza sativa source expts:
- Os_51K Rice Genome Array 51K: 162 expts:
GEO (151), PlexDB (11)
-contains 57,381 probe sets in total, of which 1347 represent 1260 transcripts of an indica variety and 54 168 represent 48 564 transcripts of a japonica variety.
- 39 tissues/organs from throughout the plant life cycle, two indica varieties; Zhenshan 97 and Minghui 63.
See also http://ricearray.org/index.shtml
