Difference between revisions of "For Next Release:"
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Back to [[Main_Page#PO_Releases_and_Database_Updates]] | Back to [[Main_Page#PO_Releases_and_Database_Updates]] | ||
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| + | =For the next release:= | ||
| + | ==Continue revisions and adding new terms for wood ontology== | ||
| + | ''Most terms are in the PAE branch or for GO.'' | ||
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| + | ''Can continue to add annotations as we go along, as well.'' | ||
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| + | ==Potato Annotations== | ||
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| + | LC has been in contact with the group who published the [http://www.nature.com/nature/journal/v475/n7355/full/nature10158.html#/f4 potato genome paper] and they are interested in collaborating with us to assign ontology terms to the annotations. | ||
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| + | From Dr. Richard Finker (Wageningen, The Netherlands): | ||
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| + | "We are also interested to use trait ontologies to assist in candidate gene selection within regions of interest, I'm eager to discuss with you on the efforts of cross linking ontologies to biological relevant entities. e.g. a metabolite content trait to its e.g. chebi ontology ID, form which we could obtain info about the pathway." | ||
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| + | ''This will go in the next release, do they have expression data- RNA Seq?'' | ||
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| + | ==Wood Annotations== | ||
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| + | [http://dendrome.ucdavis.edu/treegenes/ TreeGenes] and [http://www.fagaceae.org/ Fagaceae Genomics Web] | ||
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| + | ==Annotations to soybean- [http://soybase.org/ SoyBase]== | ||
Revision as of 21:57, 1 October 2015
Back to Main_Page#PO_Releases_and_Database_Updates
For the next release:
Continue revisions and adding new terms for wood ontology
Most terms are in the PAE branch or for GO.
Can continue to add annotations as we go along, as well.
Potato Annotations
LC has been in contact with the group who published the potato genome paper and they are interested in collaborating with us to assign ontology terms to the annotations.
From Dr. Richard Finker (Wageningen, The Netherlands):
"We are also interested to use trait ontologies to assist in candidate gene selection within regions of interest, I'm eager to discuss with you on the efforts of cross linking ontologies to biological relevant entities. e.g. a metabolite content trait to its e.g. chebi ontology ID, form which we could obtain info about the pathway."
This will go in the next release, do they have expression data- RNA Seq?
Wood Annotations
TreeGenes and Fagaceae Genomics Web
