Difference between revisions of "Release 19"
| Line 64: | Line 64: | ||
>PO:0007615 : flower development stage [48067] | >PO:0007615 : flower development stage [48067] | ||
| − | =New Annotation Files= | + | =New or expanded Annotation Files= |
| − | + | * wood genes [http://dendrome.ucdavis.edu/treegenes/ TreeGenes] and [http://www.fagaceae.org/ Fagaceae Genomics Web] | |
| − | * | + | * cotton- [http://www.agbase.msstate.edu/ AgBase] |
| − | + | * soybean- [http://soybase.org/ SoyBase] | |
| − | + | * potato | |
| − | + | * rice | |
| + | |||
| + | * grape | ||
| − | |||
| − | |||
==Annotation Guidelines== | ==Annotation Guidelines== | ||
Revision as of 18:33, 13 November 2012
See also:
Goals and Timeline for the next Release #19
Timeline for Release: Goal is mid December 2012
To-do list for Release #19
- Update the webpages- which ones are top priority? See below
- move files to live tag, update /trunk/ontology/OBO_format/Readme.txt
- file naming and which variations of the file to create for each release - check with cjm
Priorities:
Continue major revision of PSDS
Focus on the revisions on:
PO:0007033 : whole plant development stage
> PO:0028002 : sporophyte development stage
>> PO:0007130 : sporophyte reproductive stage [46604]: (Some still have the numbers preceding them, others don't)
>>> PO:0007047 : 3 inflorescence detectable stage [29131]
>>>PO:0007016 : 4 flowering [28057]
>>>PO:0007042 : 5 fruit formation [31009]
>>>PO:0007010 : 6 ripening [37642]
>> PO:0007134 : sporophyte vegetative stage [60370]: (Some still have the numbers preceding them, others don't)
>>>PO:0007057 : 0 seed germination stage [29568]
>>>PO:0007112 : 1 main shoot growth stage [47411]
>>>PO:0007131 : seedling development stage [26673]
PO:0009012 : plant structure development stage:
> PO:0007615 : flower development stage [48067]
>PO:0001083 : inflorescence development stage [48067]
PO:0025339 : plant organ development stage [46618]
>PO:0001050 : leaf development stage [45968]
>PO:0007520 : root development stage [25208]
PO:0025338 : collective plant structure development stage [49645]
>PO:0007615 : flower development stage [48067]
New or expanded Annotation Files
- wood genes TreeGenes and Fagaceae Genomics Web
- cotton- AgBase
- soybean- SoyBase
- potato
- rice
- grape
Annotation Guidelines
Comments from PJ from previous meeting (9-27-11): Ask MS if she can write up a small blurb on how she created the Maize annotations. Maize probe ids => gene ids methods and cut-offs, a guide for other collaborators and a page for the info. Maybe co-author it with SR
-This will also be helpful when applying for new grants
-it would be helpful to have a detailed guide on our wiki for collaborators
Complete old user requests/SF tracker items
Ongoing process....
See: Items_for_future_meetings
Plant Ontology Web Site and Browser Update:
- need to update the download page and the citations pages!!
Please see Plant_Ontology_Web_Site_Update:_2012 for more details
- Items on the tracker:
PO:IDs in definitions working as links, fixes to web page headers
- Browser update- what is the status of this?
Tabled for the next release:
Continue revisions and adding new terms for wood ontology
Most terms are in the PAE branch or for GO.
Can continue to add annotations as we go along, as well.
