Difference between revisions of "Plant Ontology Citations"
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* Lai L, Liberzon A, Hennessey J, Jiang G, Qi J, Mesirov JP, Ge SX (2012) AraPath: a knowledgebase for pathway analysis in Arabidopsis. Bioinformatics 28: 2291–2292. [http://bioinformatics.oxfordjournals.org/content/28/17/2291.abstract abstract] | * Lai L, Liberzon A, Hennessey J, Jiang G, Qi J, Mesirov JP, Ge SX (2012) AraPath: a knowledgebase for pathway analysis in Arabidopsis. Bioinformatics 28: 2291–2292. [http://bioinformatics.oxfordjournals.org/content/28/17/2291.abstract abstract] | ||
*Deans, Andrew R., Matthew J. Yoder, and James P. Balhoff. “Time to Change How We Describe Biodiversity.” Trends in Ecology & Evolution 27, no. 2 (February 1, 2012): 78–84. [http://www.cell.com/trends/ecology-evolution/fulltext/S0169-5347(11)00330-2 link to full text] | *Deans, Andrew R., Matthew J. Yoder, and James P. Balhoff. “Time to Change How We Describe Biodiversity.” Trends in Ecology & Evolution 27, no. 2 (February 1, 2012): 78–84. [http://www.cell.com/trends/ecology-evolution/fulltext/S0169-5347(11)00330-2 link to full text] | ||
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| + | =2011= | ||
| + | Iida K, Kawaguchi S, Kobayashi N, Yoshida Y, Ishii M, Harada E, Hanada K, Matsui A, Okamoto M, Ishida J, et al (2011) ARTADE2DB: Improved Statistical Inferences for Arabidopsis Gene Functions and Structure Predictions by Dynamic Structure-Based Dynamic Expression (DSDE) Analyses. Plant and Cell Physiology 52: 254–264 [http://pcp.oxfordjournals.org/content/52/2/254.full#F6 link] | ||
*Kumar, T. K. A., Crow, J. A., Wennblom, T. J., Abril, M., Letcher, P. M., Blackwell, M., Roberson, R. W., and McLaughlin, D. J. (2011). An ontology of fungal subcellular traits. American Journal of Botany, 98, 1504 -1510. [http://www.amjbot.org/content/98/9/1504.abstract Kumar et al, 2011] | *Kumar, T. K. A., Crow, J. A., Wennblom, T. J., Abril, M., Letcher, P. M., Blackwell, M., Roberson, R. W., and McLaughlin, D. J. (2011). An ontology of fungal subcellular traits. American Journal of Botany, 98, 1504 -1510. [http://www.amjbot.org/content/98/9/1504.abstract Kumar et al, 2011] | ||
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*Schaeffer, M. L., Harper, L. C., Gardiner, J. M., Andorf, C. M., Campbell, D. A., Cannon, E. K. S., Sen, T. Z., and Lawrence, C. J. (2011). MaizeGDB: curation and outreach go hand-in-hand. Database, 2011. | *Schaeffer, M. L., Harper, L. C., Gardiner, J. M., Andorf, C. M., Campbell, D. A., Cannon, E. K. S., Sen, T. Z., and Lawrence, C. J. (2011). MaizeGDB: curation and outreach go hand-in-hand. Database, 2011. | ||
| + | =2010= | ||
*Hong, C. (2010). Competency evaluation of plant character ontologies against domain literature. Journal of the American Society for Information Science & Technology, 61(6), 1144-1165. doi:10.1002/asi.21325 | *Hong, C. (2010). Competency evaluation of plant character ontologies against domain literature. Journal of the American Society for Information Science & Technology, 61(6), 1144-1165. doi:10.1002/asi.21325 | ||
Revision as of 05:57, 12 November 2012
2012
- Lai L, Liberzon A, Hennessey J, Jiang G, Qi J, Mesirov JP, Ge SX (2012) AraPath: a knowledgebase for pathway analysis in Arabidopsis. Bioinformatics 28: 2291–2292. abstract
- Deans, Andrew R., Matthew J. Yoder, and James P. Balhoff. “Time to Change How We Describe Biodiversity.” Trends in Ecology & Evolution 27, no. 2 (February 1, 2012): 78–84. link to full text
2011
Iida K, Kawaguchi S, Kobayashi N, Yoshida Y, Ishii M, Harada E, Hanada K, Matsui A, Okamoto M, Ishida J, et al (2011) ARTADE2DB: Improved Statistical Inferences for Arabidopsis Gene Functions and Structure Predictions by Dynamic Structure-Based Dynamic Expression (DSDE) Analyses. Plant and Cell Physiology 52: 254–264 link
- Kumar, T. K. A., Crow, J. A., Wennblom, T. J., Abril, M., Letcher, P. M., Blackwell, M., Roberson, R. W., and McLaughlin, D. J. (2011). An ontology of fungal subcellular traits. American Journal of Botany, 98, 1504 -1510. Kumar et al, 2011
- Schaeffer, M. L., Harper, L. C., Gardiner, J. M., Andorf, C. M., Campbell, D. A., Cannon, E. K. S., Sen, T. Z., and Lawrence, C. J. (2011). MaizeGDB: curation and outreach go hand-in-hand. Database, 2011.
2010
- Hong, C. (2010). Competency evaluation of plant character ontologies against domain literature. Journal of the American Society for Information Science & Technology, 61(6), 1144-1165. doi:10.1002/asi.21325
- Qiuling He, Arthur Berg, Yao Li, C. Eduardo Vallejos and Rongling Wu. 2010. Mapping genes for plant structure, development and evolution: functional mapping meets ontology. Trends in Genetics 26(1): 39-46 Abstract Full Text
- De Bodt, S., Carvajal, D., Hollunder, J., Van den Cruyce, J., Movahedi, S., and Inze, D. (2010). CORNET: A User-Friendly Tool for Data Mining and Integration. Plant Physiol., 152, 1167-1179.
- Clark, J. I., Brooksbank, C., and Lomax, J. (2005). It's All GO for Plant Scientists. Plant Physiol., 138, 1268-1279. (this does not actually cite the PO)
- Kobayashi N, Ishii M, Takahashi S, Mochizuki Y, Matsushima A, Toyoda T (2011) Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases. Nucleic Acids Research 39: W533 –W540
- McCouch, S. R., McNally, K. L., Wang, W. and Sackville Hamilton, R. (2012). Genomics of gene banks: A case study in rice. Am J of Bot., 99, 407 -423. Link to full text
