Difference between revisions of "The cROP (Common Reference Ontologies for Plants) Initiative"
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# ENVO: [http://www.obofoundry.org/cgi-bin/detail.cgi?id=envo Ontology of environmental features and habitats] | # ENVO: [http://www.obofoundry.org/cgi-bin/detail.cgi?id=envo Ontology of environmental features and habitats] | ||
# PATO: [http://www.obofoundry.org/cgi-bin/detail.cgi?id=quality Phenotype Quality Ontology] | # PATO: [http://www.obofoundry.org/cgi-bin/detail.cgi?id=quality Phenotype Quality Ontology] | ||
| − | # Taxonomy | + | # Taxonomy: [http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl USDA-GRIN] / [http://www.obofoundry.org/cgi-bin/detail.cgi?id=ncbi_taxonomy NCBI] / New? |
| − | # GAZ: [http://bioportal.bioontology.org/ontologies/1397 Gazetteer (geographical locations) | + | # GAZ: [http://bioportal.bioontology.org/ontologies/1397 An Ontologically-Informed Gazetteer] (geographical locations) |
| − | # Plant IDO*: Plant Infectious Disease Ontology [http://kr-med.org/icbofois2012/proceedings/ICBO2012/ICBO2012PapersSingleFiles/ICBO-2012-session1-paper01-walls.pdf | + | # Plant IDO*: Plant Infectious Disease Ontology [http://kr-med.org/icbofois2012/proceedings/ICBO2012/ICBO2012PapersSingleFiles/ICBO-2012-session1-paper01-walls.pdf] |
# Plant Diseases*: [http://wiki.plantontology.org/index.php/Plant_Disease_Ontology List of plant diseases] | # Plant Diseases*: [http://wiki.plantontology.org/index.php/Plant_Disease_Ontology List of plant diseases] | ||
# CHEBI: [http://www.ebi.ac.uk/chebi/ dictionary of molecular entities] | # CHEBI: [http://www.ebi.ac.uk/chebi/ dictionary of molecular entities] | ||
Revision as of 17:12, 2 October 2012
First proposed set of ontologies to be developed within the cROP Initiative
- PO*: Plant Ontology
- GO: Gene Ontology
- PRO: Protein Ontology
- TO*: Plant Trait Ontology TO browser
- EO*: Environment Ontology (plant treatments) browse at Gramene
- ENVO: Ontology of environmental features and habitats
- PATO: Phenotype Quality Ontology
- Taxonomy: USDA-GRIN / NCBI / New?
- GAZ: An Ontologically-Informed Gazetteer (geographical locations)
- Plant IDO*: Plant Infectious Disease Ontology [1]
- Plant Diseases*: List of plant diseases
- CHEBI: dictionary of molecular entities
- PCO: population and community ontology
- For ontologies labeled *, the 'Planteome' group may adopt their development.
