Crop Plant Trait Ontology Workshop Agenda

Dates: Sept 13-15th, 2012 (Thursday through Saturday)

Location: Oregon State University

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Weds Sept. 12th, 6-8pm

Dinner at a local venue for those who arrive early

Snack and refreshments will be available at Finley Hall or Arnold dining center will be open until 7pm

Thursday September 13, 8am to 9pm

Location: CH2M Hill Alumni Center Williamette Room

* 8:00- 9am Continental Breakfast in Williamette Room

• 9:00- 9:15 Welcome and Introductions of the Organizing Committee - Pankaj Jaiswal, OSU

• 9:15- 9:30 Ruth Bastow: Insights and follow-up from EBI Crop Ontology Meeting

• 9:30- 10:00 Melissa Haendel; Ontology 101

• 10:00- 10:30 The Plant Ontology and the Trait Ontology- Laurel Cooper, OSU

* 10:30- 10:45 coffee break

• 10:45- 11:00 Elizabeth Arnaud, Bioversity /GCP

• 11:00- 11:15 Naama Menda- Sol Genomics Network

• 11:15- 11:30 Rex Nelson- SoyBase

• 11:30- 11:45 Mary Schaeffer- MaizeGDB

• 11:45- 12:00 0pen time for questions and discussion

* 12:00- 1:00 Lunch: Soup and Salad Buffet; Elle/Burlingham Room #111

• 1:00- 1:30 Introduction to Annotations and Data; Pankaj Jaiswal, OSU

• 1:30- 1:40 Bob Benson, Syngenta traits

• 1:40- 1:50 Jacques Legouis; Wheat trait lists INRA, France

• 1:50- 2:00 Pawel Krajewski, transPLANT

• 2:00- 2:10 Cyril Pommier, INRA France; Ephesis

• 2:10- 2:20- John Doonan, UK Phenomics Center

• 2:20- 2:30- Dan Bolser, EBI, Ensemble, potato genomics

• 2:30- 2:40 Reinhard Simon, CIP

* 2:40- 3:00 coffee break

• 3:00- 3:10- Victoria Blake, USDA, ARS, CA GrainGenes

• 3:10- 3:20 Luke Ramsay, Barley traits

• 3:20- 3:30 C Tom Hash, ICRISAT, sorghum

• 3:30- 3:40 Ken McNally, IRRI

• 3:40- 3:50 Michael Dingkuhn, IRRI

• 3:50- 4:00 Alice Clara Augustine, Monsanto

• 4:00- 4:10 Sonia Dias- Trait Information Portal, PGR secure

• 4:10- 4:20 Sunita Kumari, KBase

• 4:20- 4:30 Sharon Lewis; Syngenta- Information governance

• 4:30- 5:00 Open time for questions and discussion

* 5:00- 6:00 break, free time

* 6:00- 7:00 Pizza dinner- Elle/Burlingham Room #111

* 7:00 to 9:00pm 'Hands-on' Ontology Session

• Requesting terms using the SourceForge trackers

• Ontology editing: Using OBO Edit- tutorial and practice

Friday Sept 14th

* 8:00- 9am Continental Breakfast in Williamette Room

9:00- 9:20 TBA

9:20- 9:30 Sushma Naithani, OSU Horticulture

9:30-9:40 Laurent DeLuc, OSU Horticulture, grape research

* 9:40- 10:00 coffee break

• 10:00- 11:00

Webex presentation Barry Smith; Ontology site, Department of Philosophy site

11:00- 12:00 discussion

* 12:00-1:00 Lunch: Assorted Wraps with Soup and Salad; Elle/Burlingham Room #111

1:00- 1:15 breakout groups are organized and task is explained

1:15- 2:45 breakout groups work

* 2:45- 3:00 coffee break

3:00- 3:30- breakout groups report on progress, discussion

3:30- 5:00 breakout groups

5:00- 5:30 breakout groups report on progress, discussion

* 5:30- 6:30 break, free time

* 6:30- 9:00 Dinner and Social -Elle/Burlingham Room #111

Sat Sept. 15th- 8am to 12 noon

* 8:00- 9am Continental Breakfast in Williamette Room

9:00- 9:30 Biological examples and ontology applications; Pankaj Jaiswal, OSU

9:30- 10:30 Breakout groups and group discussion

* 10:30- 10:45 Coffee break

10:45 Summary and conclusions

Wrap and to-do lists for follow-up

12:00 Boxed Lunches