Difference between revisions of "Ontology Resources"
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Jump to navigationJump to search (New page: ==Internet resources and textbooks== *[http://www.mobot.org/MOBOT/Research/APweb/top/glossaryA_H.html Angiosperm Phylogeny Web Glossary] *Esau K. 1977: Anatomy of Seed Plants, 2nd Edition...) |
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*On the representation of gene function in genetic databases. by Michael Ashburner, ISMB 1998. [[http://www.geneontology.org/doc/gene_ontology_discussion.html HTML]] | *On the representation of gene function in genetic databases. by Michael Ashburner, ISMB 1998. [[http://www.geneontology.org/doc/gene_ontology_discussion.html HTML]] | ||
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Revision as of 02:29, 4 December 2008
Internet resources and textbooks
- Angiosperm Phylogeny Web Glossary
- Esau K. 1977: Anatomy of Seed Plants, 2nd Edition. Wiley &Sons, Inc. ISBN:0471245208.
- Gifford E. M. and. Foster A. S, 1989. Morphology and evolution of vascular plants, 3rd Edition. W.H. Freeman & Co., New York. ISBN:0716719460.
- Kiesselbach, T. A. 1999: The Structure and Reproduction of Corn. 1999, 50th Anniversary Edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York. ISBN:0879695560.
List of projects working on ontologies
- Controlled Vocabulary and Ontologies for cereal plants (Gramene)
- Ontologies & Controlled Vocabularies for Gene Annotation of Arabidopsis (TAIR)
- Ontologies and Controlled Vocabularies for Maize (Maize Mapping Project)
- Ontologies to describe biochemical charateristics. Developed by Gene Ontology Consortium (GO)
- Open Biological Ontology Foundry: an open community for sharing ontologies (OBO)
- FAO's agricultural thesaurus (AGROVOC)
- Agricultural Ontology Service Project (AOS)
Publications
- Bioinformatics and its applications in plant biology. [Abstract] [Full Text]
Annual Review of Plant Biology, 2006, Vol 57: 335-360.
- Ontologies for data and knowledge sharing in biology: plant ROS signaling as a case study. [Abstract] [Full Text]
Bioessays, 2006, Vol28(2): 199-210.
- An ontology for cell types. [Abstract] [Full Text]
Genome Biology, 2005, Vol 6: R21.
- The Gene Ontology (GO) database and informatics resource. [Abstract] [Full Text]
Nucleic Acids Research, 2004, Vol 32: D258-D261.
- Bio-ontologies-fast and furious. [Full Text]
Nature Biotechnology, 2004, Vol 22(6): 773-774.
- Functional annotation of the Arabidopsis genome using controlled vocabularies. [Abstract] [Full Text]
Plant Physiology, 2004, Vol 135(2): 745-755.
- Ontologies in biology: design, applications and future challenges. [Abstract] [Full Text]
Nature Reviews Genetics 2004, Vol 5(3): 213-222.
- Zea mays ontology - a database of international terms
Trends in Plant Science, 2003, 8(11): 517-520 [Abstract] [Full Text]
- Ontologies: Formalising biological knowledge for bioinformatics. [Abstract] [Full Text]
Bioessays, 2003, Vol 25(5): 501-506.
- Extension and Integration of the Gene Ontology (GO): Combining GO Vocabularies With External Vocabularies. [Abstract] [Full Text]
Genome research 2002,12: 1982-1991.
- The Plant OntologyTM Consortium and Plant Ontologies [Abstract] [Full Text]
Comparative and Functional Genomics, 2002, Vol 3(2), 137-142.
- Gramene: development and integration of trait and gene ontologies for rice [Abstract] [Full Text]
Comparative and Functional Genomics, 2002, Vol 3(2), 132-136.
- Creating the gene ontology resource: design and implementation. [Abstract] [Full Text]
Genome Research, 2001, Vol 11(8), 1425-1433.
- Gene Ontology: tool for the unification of biology. [Abstract] [Full Text]
Nature Genetics, 2000, 25: 25-29.
- On the representation of gene function in genetic databases. by Michael Ashburner, ISMB 1998. [HTML]
