Difference between revisions of "Crop Plant Trait Ontology Workshop Agenda"
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Jump to navigationJump to search| Line 11: | Line 11: | ||
Location: [http://oregonstate.edu/conferences/ch2m-hill-alumni-center CH2M Hill Alumni Center] Williamette Room | Location: [http://oregonstate.edu/conferences/ch2m-hill-alumni-center CH2M Hill Alumni Center] Williamette Room | ||
| − | * 8:00- 9am Continental Breakfast in Williamette Room | + | '''* 8:00- 9am Continental Breakfast in Williamette Room''' |
* 9:00- 9:15 Welcome and Introductions of the organizing Committee - Pankaj Jaiswal, OSU | * 9:00- 9:15 Welcome and Introductions of the organizing Committee - Pankaj Jaiswal, OSU | ||
| Line 21: | Line 21: | ||
* 10:00- 10:30 Biological examples and ontology applications; Pankaj Jaiswal, OSU | * 10:00- 10:30 Biological examples and ontology applications; Pankaj Jaiswal, OSU | ||
| − | * 10:30- 10:45 Coffee break | + | '''* 10:30- 10:45 Coffee break''' |
* 10:45- 11:00 Elizabeth Arnaud, Bioversity /GCP | * 10:45- 11:00 Elizabeth Arnaud, Bioversity /GCP | ||
| Line 33: | Line 33: | ||
* 11:45- 12:00 0pen time for questions and discussion | * 11:45- 12:00 0pen time for questions and discussion | ||
| − | * 12:00- 1:00 Lunch: Soup and Salad Buffet | + | '''* 12:00- 1:00 Lunch: Soup and Salad Buffet''' |
* 1:00- 1:30 Melissa Haendel; Ontology 101 (tenative) | * 1:00- 1:30 Melissa Haendel; Ontology 101 (tenative) | ||
| Line 63: | Line 63: | ||
* 3:40- 3:50 Sunita Kumari, KBase | * 3:40- 3:50 Sunita Kumari, KBase | ||
| − | * 3:50- 4:00 Laurent DeLuc, OSU Horticulture | + | * 3:50- 4:00 Laurent DeLuc, OSU Horticulture, grape research |
* 4:00- 4:10 Luke Ramsay, Barley traits | * 4:00- 4:10 Luke Ramsay, Barley traits | ||
| − | * 4:10- 4:20 | + | * 4:10- 4:20 C Tom Hash, ICRISAT, sorghum |
| − | * 4:20- 4:30 | + | * 4:20- 4:30 Sharon Lewis; Syngenta- Information governance |
| − | * 4:30- 4: | + | * 4:30- 4:40 Michael Dingkuhn, IRRI |
| − | * 4: | + | * 4:40- 5:00 0pen time for questions and discussion |
| + | '''* 5:00- 6:00 break, free time''' | ||
| + | '''* 6:00- 7:00 Pizza dinner- Williamette Room''' | ||
| + | * 7:00 to 9:00 | ||
| − | + | * Hands on training on ontology editing using OBO-edit | |
| − | * | + | ** OBO Edit tutorial and practice |
| − | |||
| − | * | ||
| − | |||
| − | |||
=Friday Sept 14th- all day= | =Friday Sept 14th- all day= | ||
Revision as of 16:56, 25 August 2012
Dates: Sept 13-15th, 2012 (Thursday through Saturday)
Location: Oregon State University
Weds Sept. 12th, 6-8pm
Dinner at a local venue for those who arrive early
Snack and refreshments will be available at Finley Hall or Arnold dining center will be open until 7pm
Thursday Sept. 13th- 8am to 9pm
Location: CH2M Hill Alumni Center Williamette Room
* 8:00- 9am Continental Breakfast in Williamette Room
- 9:00- 9:15 Welcome and Introductions of the organizing Committee - Pankaj Jaiswal, OSU
- 9:15- 9:30 Ruth Bastow: Insights and follow-up from EBI Crop Ontology Meeting
- 9:30- 10:00 The Plant Ontology and the Trait Ontology- Laurel Cooper, OSU
- 10:00- 10:30 Biological examples and ontology applications; Pankaj Jaiswal, OSU
* 10:30- 10:45 Coffee break
- 10:45- 11:00 Elizabeth Arnaud, Bioversity /GCP
- 11:00- 11:15 Naama Menda- Sol Genomics Network
- 11:15- 11:30 Rex Nelson- SoyBase
- 11:30- 11:45 Mary Schaeffer- MaizeGDB
- 11:45- 12:00 0pen time for questions and discussion
* 12:00- 1:00 Lunch: Soup and Salad Buffet
* 1:00- 1:30 Melissa Haendel; Ontology 101 (tenative)
- 1:30- 1:40 Bob Benson, Syngenta traits
- 1:40- 1:50 Ken McNally, IRRI
- 1:50- 2:00 Cyril Pommier, INRA France; Ephesis
- 2:00- 2:10 Victoria Carollo, USDA, ARS, CA GrainGenes
- 2:10- 2:20- John Doonan, UK Phenomics Center
- 2:20- 2:30- Dan Bolser, EBI, Ensemble, potato genomics
- 2:30- 2:40 Jacques Legouis; Wheat trait lists INRA, France
* 2:40- 3:00 coffee break
- 3:00- 3:10- Pawel Krajewski, transPLANT
- 3:10- 3:20 Sonia Dias- Trait Information Portal, PGR secure
- 3:20- 3:30 Iain Donnison- Miscanthus
- 3:30- 3:40 Reinhard Simon, CIP
- 3:40- 3:50 Sunita Kumari, KBase
- 3:50- 4:00 Laurent DeLuc, OSU Horticulture, grape research
- 4:00- 4:10 Luke Ramsay, Barley traits
- 4:10- 4:20 C Tom Hash, ICRISAT, sorghum
- 4:20- 4:30 Sharon Lewis; Syngenta- Information governance
- 4:30- 4:40 Michael Dingkuhn, IRRI
- 4:40- 5:00 0pen time for questions and discussion
* 5:00- 6:00 break, free time
* 6:00- 7:00 Pizza dinner- Williamette Room
- 7:00 to 9:00
- Hands on training on ontology editing using OBO-edit
- OBO Edit tutorial and practice
Friday Sept 14th- all day
9am Intro to Annotations and Data
10 Webex presentation Barry Smith; Ontology site, Department of Philosophy site
breakout groups
12:30 Lunch
breakout groups report on progress
breakout groups
breakout groups report on progress
dinner
Sat Sept. 15th- 8am to 12 noon
breakout groups report on progress- present project ideas?
Summary and conclusions
Wrap and to-do lists for follow-up
