Crop Plant Trait Ontology Workshop Agenda

Dates: Sept 13-15th, 2012 (Thursday through Saturday)

Location: Oregon State University

Weds Sept. 12th, 6-8pm

Dinner at a local venue for those who arrive early

Snack and refreshments will be available at Finley Hall or Arnold dining center will be open until 7pm

Thursday Sept. 13th- 8am to 9pm

Location: CH2M Hill Alumni Center Williamette Room

• 8am- 9am Continental Breakfast

• 9:00-9:15 Welcome and Introductions of the organizing Committee - Pankaj Jaiswal, OSU

• 9:15- 9:30 Ruth Bastow: Insights and follow-up from EBI Crop Ontology Meeting

• 9:30- 10:00 The Plant Ontology and the Trait Ontology- Laurel Cooper, OSU

• 10:00- 10:30 Biological examples and ontology applications; Pankaj Jaiswal, OSU

• 10:30- 10:45 Coffee break

• 10:45- 11:00 Elizabeth Arnaud, Bioversity /GCP

• 11:00- 11:15 Naama Menda- Sol Genomics Network

• 11:15- 11:30 Rex Nelson- SoyBase

• 11:30- 11:45 Mary Schaeffer- MaizeGDB

• 11:45- 12:00-

• 12:00- 1:00pm Lunch

 * 1:00- 1:30 Melissa Haendel; Ontology 101 (tenative)

• 1:30- 1:40 Bob Benson or Sharon Lewis; Syngenta traits

• 1:40- 1:50 Ken McNally, IRRI

• 1:50- 2:00 Cyril Pommier

• 2:00- 2:10 VictoriaJacques

• 2:10- 2:20- John Doonan, UK Phenomics Center

• 2:20- 2:30- Dan Bolser, EBI, Ensemble, potato genomics

• 2:45- 3:00 coffee break

• 3:00- 3:15- Pawel K, transPLant

• 3:15- 3:30 Sonia Dias- Trait Information Portal, PGR secure

• 3:30- 3:45 Iain Donnison- Miscanthus

• 3:45- 4:00 Sunita Kumari, Kbase

• 4:00- 4:15 Luke Ramsay, Barley traits

• 4:15- 4:30 Reinhard Simon, CIP

• 4:30- 4:45

• 4:45-5:00- C Tom Hash

Laurent DeLuc

Sharon

• 5-6 break

• 6:00- 7pm dinner

• 7 to 8 Hands on training on ontology editing using OBO-edit

Friday Sept 14th- all day

9am Intro to Annotations and Data

10 Webex presentation Barry Smith; Ontology site, Department of Philosophy site

breakout groups

12:30 Lunch

breakout groups report on progress

breakout groups

breakout groups report on progress

dinner

Sat Sept. 15th- 8am to 12 noon

breakout groups report on progress- present project ideas?

Summary and conclusions

Wrap and to-do lists for follow-up