Difference between revisions of "POC Conf. Call 6-29-10"
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The main goals of the meeting will be ontology development and preparation for a release, along with focused training on annotating genes and mappings. | The main goals of the meeting will be ontology development and preparation for a release, along with focused training on annotating genes and mappings. | ||
| + | |||
| + | ===*Curators discussion: Determine priorities for next release of PO:=== | ||
| − | + | '''1. Date of next release? July 2010?''' | |
| − | |||
| − | 1. Date of next release? July 2010? | ||
-What needs to be done before this release? | -What needs to be done before this release? | ||
| − | + | '''2. Is top level of Plant Structure ontology ready to go? | |
| − | + | ''' | |
| − | 2. Is top level of Plant Structure ontology ready to go? | ||
| − | |||
-Review of top level terms | -Review of top level terms | ||
| Line 39: | Line 37: | ||
| − | 3. Status and goals for is_a completeness (Ramona can report) | + | 3'''. Status and goals for is_a completeness (Ramona can report)''' |
- 136 terms without is_a parents | - 136 terms without is_a parents | ||
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| − | 4. Should we aim to complete one branch of the ontology? For Example: leaves, in vitro terms or plant cells, specific type- axial cells for example hydroids and leptoids? | + | '''4. Should we aim to complete one branch of the ontology?''' For Example: leaves, in vitro terms or plant cells, specific type- axial cells for example hydroids and leptoids? |
| − | 5. Changing lower-level terms to include cross products and genus-differentia definitions. | + | '''5. Changing lower-level terms to include cross products and genus-differentia definitions.''' |
-How much can be done before release | -How much can be done before release | ||
| − | 6. Goals and timetable for the | + | '''6. Goals and timetable for the next release:''' |
fall 2010? | fall 2010? | ||
| + | |||
| + | |||
| + | ===Items from 6-23-10 Conf Call=== | ||
Revision as of 20:16, 28 June 2010
POC meeting, Webex Conference Call; Date: June 29th, 2010 10am (PDT)
In attendance:
POC members:
Absent:
Collaborators:
Acceptance of the minutes from the 6-23-10 meeting? All in favor?
Workshop page: [Corvallis Workshop June 29th and 30th, 2010]
Agenda for June 29th Conference Call:
The main goals of the meeting will be ontology development and preparation for a release, along with focused training on annotating genes and mappings.
*Curators discussion: Determine priorities for next release of PO:
1. Date of next release? July 2010?
-What needs to be done before this release?
2. Is top level of Plant Structure ontology ready to go?
-Review of top level terms
-Review of second level terms
-Should structures have part_of relations (to whole plant, sporophyte or gametophyte) whenever possible?
-Do we want to keep in vitro structures or send to OBI?
3. Status and goals for is_a completeness (Ramona can report)
- 136 terms without is_a parents
Based on definitions:
-73 of these terms have obvious parents (many of them some kind of portion of plant tissue)
-11 more terms could be assigned parents if new terms were created
-15 terms could be assinged parents with some consideration
-36 terms need discussion to determine parent terms (no obvious parent)
4. Should we aim to complete one branch of the ontology? For Example: leaves, in vitro terms or plant cells, specific type- axial cells for example hydroids and leptoids?
5. Changing lower-level terms to include cross products and genus-differentia definitions.
-How much can be done before release
6. Goals and timetable for the next release:
fall 2010?
