Difference between revisions of "AgBase"

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database: AgBase
 
database: AgBase
  
object: Anything with a Uniprot Gene Name or GenBank ID
+
object: Anything with a Uniprot Gene Name or GenBank ID or GO ID
  
 
example_id: AgBase:Q6GVK7
 
example_id: AgBase:Q6GVK7

Revision as of 20:08, 15 December 2011

AgBase

Adding annotations for seed trichome terms to describe the development of cotton fibers

DbxRefs for Annotations

Need to create stanza

maizeGDB example:


abbreviation: MaizeGDB

database: Maize Genetics and Genomics Database

object: Anything with a MaizeGDB Object ID Number or Gene Model Name

example_id: MaizeGDB:881225

generic_url: http://www.maizegdb.org/

url_syntax: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=[example_id]

url_example: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=881225


abbreviation: AgBase

database: AgBase

object: Anything with a Uniprot Gene Name or GenBank ID or GO ID

example_id: AgBase:Q6GVK7

generic_url: http://agbase.msstate.edu/index.html

url_syntax: http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB/TrEMBL&uid=[example_id]_GOSHI&gb_acc=[example_id]

url_example: http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB/TrEMBL&uid=Q8VWP8_GOSHI&gb_acc=Q8VWP8