Difference between revisions of "Related Publications"

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*Bioinformatics and its applications in plant biology. [[http://arjournals.annualreviews.org/doi/abs/10.1146/annurev.arplant.56.032604.144103 Abstract]] [[http://arjournals.annualreviews.org/doi/full/10.1146/annurev.arplant.56.032604.144103 Full Text]]<br />[http://arjournals.annualreviews.org/loi/arplant Annual Review of Plant Biology], 2006, Vol 57: 335-360.<br />
 
*Bioinformatics and its applications in plant biology. [[http://arjournals.annualreviews.org/doi/abs/10.1146/annurev.arplant.56.032604.144103 Abstract]] [[http://arjournals.annualreviews.org/doi/full/10.1146/annurev.arplant.56.032604.144103 Full Text]]<br />[http://arjournals.annualreviews.org/loi/arplant Annual Review of Plant Biology], 2006, Vol 57: 335-360.<br />
  
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*On the representation of gene function in genetic databases. by Michael Ashburner, ISMB 1998. [[http://www.geneontology.org/doc/gene_ontology_discussion.html HTML]] <br />
 
*On the representation of gene function in genetic databases. by Michael Ashburner, ISMB 1998. [[http://www.geneontology.org/doc/gene_ontology_discussion.html HTML]] <br />
 +
 +
Publications
 +
 +
Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants. In Anatomy Ontologies for Bioinformatics, Springer, 2008, p 27-42. [Book]
 +
 +
The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations.  [Abstract]  [Full Text]
 +
Nucleic Acid Research, 2008, 36(Database issue):D449-D454
 +
 +
The Plant Structure Ontology, a unified vocabulary of anatomy and morphology of a flowering plant.    [Abstract]  [Full Text]
 +
Plant Physiology, 2007, 143: 587-599 
 +
 +
Whole-plant growth stage ontology for angiosperms and its application in plant biology.  [Abstract]  [Full Text]
 +
Plant Physiology, 2006, 142: 414-428
 +
 +
Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages.  [Abstract]  [Full Text]
 +
Comparative and Functional Genomics, 2005, Volume 6(7-8), 388 - 397
 +
 +
The Gene Ontology (GO) database and informatics resource.  [Abstract]  [Full Text]
 +
Nucleic Acids Research, 2004, Vol 32: D258-D261.
 +
 +
Bio-ontologies-fast and furious.  [Full Text]
 +
Nature Biotechnology, 2004, Vol 22(6): 773-774.
 +
 +
Functional annotation of the Arabidopsis genome using controlled vocabularies.  [Abstract]  [Full Text]
 +
Plant Physiology, 2004, Vol 135(2): 745-755.
 +
 +
Ontologies in biology: design, applications and future challenges.    [Abstract]  [Full Text]
 +
Nature Reviews Genetics 2004, Vol 5(3): 213-222.
 +
 +
Zea mays ontology – a database of international terms
 +
Trends in Plant Science, 2003, 8(11): 517-520 [Abstract]
 +
 +
Ontologies: Formalising biological knowledge for bioinformatics.  [Abstract]  [Full Text]
 +
Bioessays, 2003, Vol 25(5): 501-506.
 +
 +
Extension and Integration of the Gene Ontology (GO): Combining GO Vocabularies With External Vocabularies.    [Abstract]  [Full Text]
 +
Genome research 2002,12: 1982-1991.
 +
 +
The Plant OntologyTM Consortium and Plant Ontologies  [Abstract]  [Full Text]
 +
Comparative and Functional Genomics, 2002, Vol 3(2), 137-142
 +
 +
Gramene: development and integration of trait and gene ontologies for rice  [Abstract]  [Full Text]
 +
Comparative and Functional Genomics, 2002, Vol 3(2), 132-136
 +
 +
Creating the gene ontology resource: design and implementation.  [Abstract]  [Full Text]
 +
Genome Research, 2001, Vol 11(8), 1425-1433
 +
 +
Gene Ontology: tool for the unification of biology.  [Abstract]  [Full Text]
 +
Nature Genetics, 2000, 25: 25-29
 +
 +
On the representation of gene function in genetic databases. by Michael Ashburner, ISMB 1998.  [HTML]
  
 
[[Category:Documents]]
 
[[Category:Documents]]
 
[[Category:Publications]]
 
[[Category:Publications]]

Revision as of 23:35, 18 July 2011

  • Ontologies for data and knowledge sharing in biology: plant ROS signaling as a case study. [Abstract] [Full Text]
    Bioessays, 2006, Vol28(2): 199-210.
  • Extension and Integration of the Gene Ontology (GO): Combining GO Vocabularies With External Vocabularies. [Abstract] [Full Text]
    Genome research 2002,12: 1982-1991.
  • On the representation of gene function in genetic databases. by Michael Ashburner, ISMB 1998. [HTML]



  • Surrounding Space: On the Ontology of Organism-Environment Relations. Theory in Biosciences 120:2 (2002), 139–162 [Smith and Varzi, 2002]
  • The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration”, Nature Biotechnology,25 (11), November 2007, 1251 -1255. [Smith et al, 2007]
  • Relations in Biomedical Ontologies”, Genome Biology (2005), 6 (5), R46. [Smith etal, 2005]
  • Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants. In Anatomy Ontologies for Bioinformatics, Springer, 2008, p 27-42. [Book]
  • The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations. [Abstract] [Full Text]
    Nucleic Acid Research, 2008, 36(Database issue):D449-D454
  • Zea mays ontology – a database of international terms
    Trends in Plant Science, 2003, 8(11): 517-520 [Abstract]
  • Extension and Integration of the Gene Ontology (GO): Combining GO Vocabularies With External Vocabularies. [Abstract] [Full Text]
    Genome research 2002,12: 1982-1991.
  • On the representation of gene function in genetic databases. by Michael Ashburner, ISMB 1998. [HTML]

Publications

Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants. In Anatomy Ontologies for Bioinformatics, Springer, 2008, p 27-42. [Book]

The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations. [Abstract] [Full Text] Nucleic Acid Research, 2008, 36(Database issue):D449-D454

The Plant Structure Ontology, a unified vocabulary of anatomy and morphology of a flowering plant. [Abstract] [Full Text] Plant Physiology, 2007, 143: 587-599

Whole-plant growth stage ontology for angiosperms and its application in plant biology. [Abstract] [Full Text] Plant Physiology, 2006, 142: 414-428

Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages. [Abstract] [Full Text] Comparative and Functional Genomics, 2005, Volume 6(7-8), 388 - 397

The Gene Ontology (GO) database and informatics resource. [Abstract] [Full Text] Nucleic Acids Research, 2004, Vol 32: D258-D261.

Bio-ontologies-fast and furious. [Full Text] Nature Biotechnology, 2004, Vol 22(6): 773-774.

Functional annotation of the Arabidopsis genome using controlled vocabularies. [Abstract] [Full Text] Plant Physiology, 2004, Vol 135(2): 745-755.

Ontologies in biology: design, applications and future challenges. [Abstract] [Full Text] Nature Reviews Genetics 2004, Vol 5(3): 213-222.

Zea mays ontology – a database of international terms Trends in Plant Science, 2003, 8(11): 517-520 [Abstract]

Ontologies: Formalising biological knowledge for bioinformatics. [Abstract] [Full Text] Bioessays, 2003, Vol 25(5): 501-506.

Extension and Integration of the Gene Ontology (GO): Combining GO Vocabularies With External Vocabularies. [Abstract] [Full Text] Genome research 2002,12: 1982-1991.

The Plant OntologyTM Consortium and Plant Ontologies [Abstract] [Full Text] Comparative and Functional Genomics, 2002, Vol 3(2), 137-142

Gramene: development and integration of trait and gene ontologies for rice [Abstract] [Full Text] Comparative and Functional Genomics, 2002, Vol 3(2), 132-136

Creating the gene ontology resource: design and implementation. [Abstract] [Full Text] Genome Research, 2001, Vol 11(8), 1425-1433

Gene Ontology: tool for the unification of biology. [Abstract] [Full Text] Nature Genetics, 2000, 25: 25-29

On the representation of gene function in genetic databases. by Michael Ashburner, ISMB 1998. [HTML]

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