Difference between revisions of "PAG 2011 Collaborators Workshop"

From Plant Ontology Wiki
Jump to navigationJump to search
Line 29: Line 29:
  
 
The Plant Ontology is being utilized as they develop a Maize Gene Atlas.  They are working on a large set of Nimblegen and RNA_Seq expression data, from 61 tissues, at various plant growth stages.  These data will be added to the Plant Ontology's existing annotations.
 
The Plant Ontology is being utilized as they develop a Maize Gene Atlas.  They are working on a large set of Nimblegen and RNA_Seq expression data, from 61 tissues, at various plant growth stages.  These data will be added to the Plant Ontology's existing annotations.
 
==Others:==
 
 
* Genevestigator: contact?  (support@genevestigator.com)  [https://www.genevestigator.com/gv/doc/ontologies.jsp Ontologies]
 
 
* VirtualPlant who, use their "contact us" form?  [http://virtualplant.bio.nyu.edu/cgi-bin/vpweb2/ Virtual plant]
 
 
* [http://www.geneontology.org/ Gene Ontology]
 
 
* Shoshi Kikuchi, National Institute of Agrobiological Sciences, Japan
 
 
* Helen Parkinson- Array Express EBI
 
 
* Nottingham Arabidopsis [http://arabidopsis.info/cgi-bin/ontology/nasc_po/go.cgi?search_constraint=terms&action=replace_tree&session_id=8730b1287179734 NASC Ontology page]
 
 
* OryzaBase:  to: Yukiko Yamazaki
 
 
* TraitNet:  Coordinators Farshid Ahrestani (fa2260@columbia.edu) and Dan Bunker (dbunker@njit.edu)
 
 
* CIMMYT, Mexico Generation Challenge Program:  Rosemary Shrestha, Elizabeth Arnaud? see: [http://intl-pag.org/19/19-cp.html GCP workshop]
 
 
* BRENDA to:project leader Prof. Dr. Dietmar Schomburg
 
 
* UniProt  "contact us" page ? Rachel Huntley, someone doing plant annotations from SwissProt
 
 
* BAR:  Nicholas Provert and Rohan Patel
 
 
* [http://www.nig.ac.jp/section/kurata/kurata-e.html Nori Kurata] see [http://pcp.oxfordjournals.org/content/early/2010/11/09/pcp.pcq165.abstract Rice Atlas paper preprint- Plant and Cell Physiology]
 
 
* [http://beta.irri.org/projects15/en/consortium-c4rice/502-profilerfurbank Robert Furbank, IRRI]
 

Revision as of 17:41, 10 December 2010

Date and Time:

Sunday, January 16th, Late Morning to include a buffet lunch

Time: 10:30-1:00 pm (will wrap up in time to get to 1:30 sessions)


Where: Town and Country Hotel, Windsor Room


See list of other potential speakers and invitees PAG 2011 PO Workshop Invitees and Speakers

Summary and Objectives:

- We have about 4 or 5 speakers from groups that use the PO or share annotations with us, or who we would like to develop collaborations with

- The goal is to show a range of uses and highlight the utility of the Plant Ontology to the plant science community.

- Each speaker will have about 10 minutes, including time for questions, (~ 5-10 slides)

- We will have a 'working lunch' where folks can mingle and continue discussions

Agenda:

10:30am: Introduction and Welcome (Laurel Cooper, Coordinator, Plant Ontology Consortium)


10:40am: Mary Schaeffer, MaizeGDB

Title: TBA

The Plant Ontology is being utilized as they develop a Maize Gene Atlas. They are working on a large set of Nimblegen and RNA_Seq expression data, from 61 tissues, at various plant growth stages. These data will be added to the Plant Ontology's existing annotations.