Difference between revisions of "List of useful Datasets"
| Line 24: | Line 24: | ||
| − | *31 tissues/organs from throughout the plant life cycle, two ''indica'' varieties; Zhenshan 97 and Minghui 63. | + | *31 tissues/organs from throughout the plant life cycle,from two ''indica'' varieties; Zhenshan 97 and Minghui 63. |
| − | * | + | *8 (callus) samples spanning the tissue culture process of genetic transformation were also included, |
| + | *Total number of tissues were 39 | ||
| − | |||
-germinating seed | -germinating seed | ||
| − | -plumule | + | -plumule (2) |
| − | -radicle | + | -radicle (2) |
| − | -seedling ( | + | -seedling (5) |
| − | -leaf sheath | + | -leaf sheath (2) |
-stem (2) | -stem (2) | ||
-leaf (4) | -leaf (4) | ||
| − | -lemma | + | -palea/lemma |
-stamen | -stamen | ||
-spikelet | -spikelet | ||
| − | -endosperm ( | + | -endosperm (3) |
-panicle (1-5) | -panicle (1-5) | ||
| + | -root | ||
| + | -shoot | ||
| + | -Callus (8) | ||
Data was deposited in the database CREP [http://crep.ncpgr.cn Collections of Rice Expression Profiling]. | Data was deposited in the database CREP [http://crep.ncpgr.cn Collections of Rice Expression Profiling]. | ||
Revision as of 23:46, 17 November 2010
Genevestigator
Organisms: High quality sources only:
Arabidopsis thaliana source expts:
- AG 8K array, 90 expts
NASC (72), GEO (18)
- ATH1: 22K array: 5760 expts
-Gruissem lab (18), NSAC (326), FGCZ (55), GEO (2731), ArrayExpress (1679), AtGenExpress (876), TAIR (38), other (37)
Oryza sativa source expts:
- Os_51K Rice Genome Array 51K: 162 expts:
GEO (151), PlexDB (11)
Rice Gene Expression Atlas (Wang et al, 2010)
-contains 57,381 probe sets in total, of which 1347 represent 1260 transcripts of an indica variety and 54 168 represent 48 564 transcripts of a japonica variety.
- 31 tissues/organs from throughout the plant life cycle,from two indica varieties; Zhenshan 97 and Minghui 63.
- 8 (callus) samples spanning the tissue culture process of genetic transformation were also included,
- Total number of tissues were 39
-germinating seed -plumule (2) -radicle (2) -seedling (5) -leaf sheath (2) -stem (2) -leaf (4) -palea/lemma -stamen -spikelet -endosperm (3) -panicle (1-5) -root -shoot -Callus (8)
Data was deposited in the database CREP Collections of Rice Expression Profiling.
-It can be searched by quarrying single gene or multiple genes using gene sequences, gene names, or the probe identifications, for items like quantified expression values, the co-expressed genes, the tissues and varieties in which they are expressed.
