Difference between revisions of "List of useful Datasets"
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Organisms: High quality sources only: | Organisms: High quality sources only: | ||
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| − | [http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2009.04100.x/full Wang et al, 2010] | + | ==[http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2009.04100.x/full Rice Gene Expression Atlas (Wang et al, 2010)]== |
*[http://www.affymetrix.com/browse/products.jsp?productId=131497&navMode=34000&navAction=jump&aId=productsNav#1_1 Affymetrics GeneChip® Rice Genome Array ] | *[http://www.affymetrix.com/browse/products.jsp?productId=131497&navMode=34000&navAction=jump&aId=productsNav#1_1 Affymetrics GeneChip® Rice Genome Array ] | ||
Revision as of 23:14, 17 November 2010
Genevestigator
Organisms: High quality sources only:
Arabidopsis thaliana source expts:
- AG 8K array, 90 expts
NASC (72), GEO (18)
- ATH1: 22K array: 5760 expts
-Gruissem lab (18), NSAC (326), FGCZ (55), GEO (2731), ArrayExpress (1679), AtGenExpress (876), TAIR (38), other (37)
Oryza sativa source expts:
- Os_51K Rice Genome Array 51K: 162 expts:
GEO (151), PlexDB (11)
Rice Gene Expression Atlas (Wang et al, 2010)
-contains 57,381 probe sets in total, of which 1347 represent 1260 transcripts of an indica variety and 54 168 represent 48 564 transcripts of a japonica variety.
- 39 tissues/organs from throughout the plant life cycle, two indica varieties; Zhenshan 97 and Minghui 63.
(a) Callus 1; (b) germinating seed; (c) plumule 1 and radicle 1; (d) seedling 1; (e) seedling 2; (f) leaf 1 and sheath 1; (g) stem 2; (h) leaf 3; (i) leaf 4; (j) lemma and stamen; (k) spikelet; (l) endosperm 2; (m) panicle 1; (n) panicle 2; (o) panicle 3; (p) panicle 4; (q) panicle 5.
Data was deposited in the database CREP Collections of Rice Expression Profiling.
-It can be searched by quarrying single gene or multiple genes using gene sequences, gene names, or the probe identifications, for items like quantified expression values, the co-expressed genes, the tissues and varieties in which they are expressed.
