Difference between revisions of "Related Publications"
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*The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration”, Nature Biotechnology,25 (11), November 2007, 1251 -1255. [[http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Smith et al, 2007]] | *The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration”, Nature Biotechnology,25 (11), November 2007, 1251 -1255. [[http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Smith et al, 2007]] | ||
| − | *Relations in Biomedical Ontologies”, Genome Biology (2005), 6 (5), R46. | + | *Relations in Biomedical Ontologies”, Genome Biology (2005), 6 (5), R46. [[http://genomebiology.com/2005/6/5/R46 Smith etal, 2005]] |
| − | [[http://genomebiology.com/2005/6/5/R46]] | ||
*Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants. In ''Anatomy Ontologies for Bioinformatics'', Springer, 2008, p 27-42. [[http://www.springer.com/computer/computational+biology+and+bioinformatics/book/978-1-84628-884-5 Book]]<br /> | *Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants. In ''Anatomy Ontologies for Bioinformatics'', Springer, 2008, p 27-42. [[http://www.springer.com/computer/computational+biology+and+bioinformatics/book/978-1-84628-884-5 Book]]<br /> | ||
Revision as of 17:36, 19 October 2010
- Surrounding Space: On the Ontology of Organism-Environment Relations. Theory in Biosciences 120:2 (2002), 139–162 [Smith and Varzi, 2002]
- The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration”, Nature Biotechnology,25 (11), November 2007, 1251 -1255. [Smith et al, 2007]
- Relations in Biomedical Ontologies”, Genome Biology (2005), 6 (5), R46. [Smith etal, 2005]
- Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants. In Anatomy Ontologies for Bioinformatics, Springer, 2008, p 27-42. [Book]
- The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations. [Abstract] [Full Text]
Nucleic Acid Research, 2008, 36(Database issue):D449-D454
- The Plant Structure Ontology, a unified vocabulary of anatomy and morphology of a flowering plant. [Abstract] [Full Text]
Plant Physiology, 2007, 143: 587-599
- Whole-plant growth stage ontology for angiosperms and its application in plant biology. [Abstract] [Full Text]
Plant Physiology, 2006, 142: 414-428
- Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages. [Abstract] [Full Text]
Comparative and Functional Genomics, 2005, Volume 6(7-8), 388 - 397
- The Gene Ontology (GO) database and informatics resource. [Abstract] [Full Text]
Nucleic Acids Research, 2004, Vol 32: D258-D261.
- Bio-ontologies-fast and furious. [Full Text]
Nature Biotechnology, 2004, Vol 22(6): 773-774.
- Functional annotation of the Arabidopsis genome using controlled vocabularies. [Abstract] [Full Text]
Plant Physiology, 2004, Vol 135(2): 745-755.
- Ontologies in biology: design, applications and future challenges. [Abstract] [Full Text]
Nature Reviews Genetics 2004, Vol 5(3): 213-222.
- Zea mays ontology – a database of international terms
Trends in Plant Science, 2003, 8(11): 517-520 [Abstract]
- Ontologies: Formalising biological knowledge for bioinformatics. [Abstract] [Full Text]
Bioessays, 2003, Vol 25(5): 501-506.
- Extension and Integration of the Gene Ontology (GO): Combining GO Vocabularies With External Vocabularies. [Abstract] [Full Text]
Genome research 2002,12: 1982-1991.
- The Plant OntologyTM Consortium and Plant Ontologies [Abstract] [Full Text]
Comparative and Functional Genomics, 2002, Vol 3(2), 137-142
- Gramene: development and integration of trait and gene ontologies for rice [Abstract] [Full Text]
Comparative and Functional Genomics, 2002, Vol 3(2), 132-136
- Creating the gene ontology resource: design and implementation. [Abstract] [Full Text]
Genome Research, 2001, Vol 11(8), 1425-1433
- Gene Ontology: tool for the unification of biology. [Abstract] [Full Text]
Nature Genetics, 2000, 25: 25-29
- On the representation of gene function in genetic databases. by Michael Ashburner, ISMB 1998. [HTML]
