Difference between revisions of "Links to sites using the PO"

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[https://database.riken.jp/sw/ ARTADE2DB]
 
[https://database.riken.jp/sw/ ARTADE2DB]
 +
 +
[http://bioportal.bioontology.org/ Bioportal]
 +
 +
[http://biolod.org/ Biolod.org]    example page: [http://biolod.org/class/cria131u4510i/PO_0004510 non-secretory trichome]
 +
see also: [http://biolod.org/database/ria131i/PO_class_structure_Plant_structure plant structure]
  
 
[http://www.brenda-enzymes.info/ BRENDA]
 
[http://www.brenda-enzymes.info/ BRENDA]
Line 8: Line 13:
  
 
[http://www.cosmoss.org/ cosmoss]
 
[http://www.cosmoss.org/ cosmoss]
 +
 +
[http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=PO EBI OLS]
  
 
[http://www.geneontology.org/ Gene Ontology]
 
[http://www.geneontology.org/ Gene Ontology]
Line 13: Line 20:
 
[http://www.gramene.org/plant_ontology/ Gramene]
 
[http://www.gramene.org/plant_ontology/ Gramene]
  
−
[http://bioportal.bioontology.org/ Bioportal]
+
[http://www.iplantcollaborative.org/ iplant]
 +
 
 +
[http://isatab.sourceforge.net/ ISA]
  
−
[http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=PO EBI OLS]
+
[https://sites.google.com/site/liveplantimagegroup/home Live Plant Image Group]
  
 +
[http://www.maizegdb.org/ MaizeGDB]
  
−
[http://www.iplantcollaborative.org/ iplant]
+
[http://www.metalife.com/index.html Metalife]
  
−
[https://sites.google.com/site/liveplantimagegroup/home Live Plant Image Group]
+
[[PO integration in MSI standards]]
  
 
[http://arabidopsis.info/cgi-bin/ontology/nasc_po/go.cgi?search_constraint=terms&action=replace_tree&session_id=8730b1287179734 NASC Ontology page]
 
[http://arabidopsis.info/cgi-bin/ontology/nasc_po/go.cgi?search_constraint=terms&action=replace_tree&session_id=8730b1287179734 NASC Ontology page]
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[http://ontofox.hegroup.org/ OntoFox]
 
[http://ontofox.hegroup.org/ OntoFox]
−
 
−
[http://isatab.sourceforge.net/ ISA]
 
−
 
−
[http://www.maizegdb.org/ MaizeGDB]
 
−
 
−
[http://www.metalife.com/index.html Metalife]
 
−
 
−
[[PO integration in MSI standards]]
 
  
 
[http://www.obofoundry.org/ OBO Foundry]
 
[http://www.obofoundry.org/ OBO Foundry]
Line 48: Line 50:
 
[https://database.riken.jp/sw/en/Home/cria301u1i/ The Integrated Databases of Plant Omics Data]
 
[https://database.riken.jp/sw/en/Home/cria301u1i/ The Integrated Databases of Plant Omics Data]
  
−
[http://solgenomics.net/tools/onto/index.pl Solanaceae Genome network (SGN) ]
+
[http://biolod.org/database/ria224i/Plant_Phenome Plant Phenome]
 +
 
 +
[http://solgenomics.net/tools/onto/index.pl Solanaceae Genome network (SGN)]
 +
 
 +
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/phenotype.cgi?search=AP%3A0025099 SuperFamily] - need to address some issues here, not an "Arabidopsis Plant Ontology".
  
 
[http://traitnet.ecoinformatics.org/ Traitnet]
 
[http://traitnet.ecoinformatics.org/ Traitnet]
Line 55: Line 61:
  
 
[http://virtualplant.bio.nyu.edu/cgi-bin/vpweb/ Virtual plant]
 
[http://virtualplant.bio.nyu.edu/cgi-bin/vpweb/ Virtual plant]
−
 
−
[http://biolod.org/ Biolod.org]    example page: [http://biolod.org/class/cria131u4510i/PO_0004510 non-secretory trichome]
 
−
see also: [http://biolod.org/database/ria131i/PO_class_structure_Plant_structure plant structure]
 
−
 
−
the PO is also featured here:  [http://biolod.org/database/ria224i/Plant_Phenome Plant Phenome]
 
  
  
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[http://bar.utoronto.ca/welcome.htm Bio-Array Resource for Plant Biology (BAR)]  
 
[http://bar.utoronto.ca/welcome.htm Bio-Array Resource for Plant Biology (BAR)]  
  
−
Crop Ontology http://www.cropontology.org/
+
[http://www.cropontology.org/ Crop Ontology]
−
 
 
  
 
[https://www.genevestigator.com/gv/plant.jsp Genevestigator]
 
[https://www.genevestigator.com/gv/plant.jsp Genevestigator]
  
 
[http://genomics.cribi.unipd.it/Main_Page CRIBI] and the [http://genomes.cribi.unipd.it/cgi-bin/pqs2/query.pl?release=v1#Ontologies Query page]
 
[http://genomics.cribi.unipd.it/Main_Page CRIBI] and the [http://genomes.cribi.unipd.it/cgi-bin/pqs2/query.pl?release=v1#Ontologies Query page]
−
 
−
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/phenotype.cgi?search=AP%3A0025099 SuperFamily] - need to address some issues here, not an "Arabidopsis Plant Ontology".
 

Revision as of 16:13, 25 September 2013

AgBase

ARTADE2DB

Bioportal

Biolod.org example page: non-secretory trichome see also: plant structure

BRENDA

Compositae Genomics Project: Morphdb

cosmoss

EBI OLS

Gene Ontology

Gramene

iplant

ISA

Live Plant Image Group

MaizeGDB

Metalife

PO integration in MSI standards

NASC Ontology page

OntoBrowser

OntoFox

OBO Foundry

OntoBee

Plantsystematics.org

Phenopsis

Riken

The Integrated Databases of Plant Omics Data

Plant Phenome

Solanaceae Genome network (SGN)

SuperFamily - need to address some issues here, not an "Arabidopsis Plant Ontology".

Traitnet

Uniprot keywords ???

Virtual plant


Others? not actually using the PO but should be:

Bio-Array Resource for Plant Biology (BAR)

Crop Ontology

Genevestigator

CRIBI and the Query page

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