Difference between revisions of "Plant Environment Ontology Wiki"
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plant environment ontology (EO:0007359): A set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies. | plant environment ontology (EO:0007359): A set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies. | ||
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| + | The issue is that this definition is defining the ontology as a whole instead of defining a general plant environment. | ||
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| + | We propose a revised name of plant environment and a new definition of: Plant growing conditions, study types and/or treatments. | ||
| + | We propose a new comment: These conditions can apply to a whole plant (PO:0000003), a plant population and/or a cultured plant cell (PO:0000005). Each growth facility such as field study, growth chamber, green house etc is a environment on its own, it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies. | ||
Revision as of 19:07, 14 February 2013
Related Links:
EO Trackeron SourceForge
Unique Identifiers:
OSU-POC - 0000001-0005000
Current Upper Level Hierarchy:
plant environment ontology (EO:0007403)
- abiotic environment (EO:0007191)
- biotic environment (EO:0007357)
- study type (EO:0007231)
- unknown environment (EO:0007403)
There are 500 classes in this ontology, 50 of them have no definition.
Ontology Issues to be Worked on in Order of Top Priority:
- We need to figure out the identifier numbers used for the ID manager.
- Upper level term plant environment ontology (EO:0007359) needs to be renamed and redefined.
Current definition: plant environment ontology (EO:0007359): A set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.
The issue is that this definition is defining the ontology as a whole instead of defining a general plant environment.
We propose a revised name of plant environment and a new definition of: Plant growing conditions, study types and/or treatments. We propose a new comment: These conditions can apply to a whole plant (PO:0000003), a plant population and/or a cultured plant cell (PO:0000005). Each growth facility such as field study, growth chamber, green house etc is a environment on its own, it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.
