Difference between revisions of "The cROP (Common Reference Ontologies for Plants) Initiative"
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| − | The vision of the cROP initiative is to develop a reference set of ontologies for all plants. | + | The vision of the cROP initiative is to develop a reference set of ontologies for all plants, by analogy with, and in collaboration with, the [http://obofoundry.org OBO] (Open Biological and Biomedical Ontologies) Foundry. |
| − | + | The first proposed set of ontologies to be developed within the cROP Initiative is as follows: | |
# PO*: [http://www.plantontology.org Plant Ontology] | # PO*: [http://www.plantontology.org Plant Ontology] | ||
| Line 17: | Line 17: | ||
# PCO: [http://code.google.com/p/popcomm-ontology/ Population and Community ontology] | # PCO: [http://code.google.com/p/popcomm-ontology/ Population and Community ontology] | ||
| − | For ontologies labeled *, the | + | For ontologies labeled *, the Planteome group may adopt their development. |
Revision as of 17:30, 2 October 2012
The vision of the cROP initiative is to develop a reference set of ontologies for all plants, by analogy with, and in collaboration with, the OBO (Open Biological and Biomedical Ontologies) Foundry.
The first proposed set of ontologies to be developed within the cROP Initiative is as follows:
- PO*: Plant Ontology
- GO: Gene Ontology
- PRO: Protein Ontology
- TO*: Plant Trait Ontology
- EO*: Environment Ontology (plant treatments) browse at Gramene
- ENVO: Ontology of environmental features and habitats
- PATO: Phenotype Quality Ontology
- Taxonomy: USDA-GRIN / NCBI / New?
- GAZ: An Ontologically-Informed Gazetteer (geographical locations)
- Plant IDO*: Plant Infectious Disease Ontology [1]
- Plant Diseases*: List of plant diseases
- CHEBI: dictionary of molecular entities
- PCO: Population and Community ontology
For ontologies labeled *, the Planteome group may adopt their development.
