Crop Plant Trait Ontology Workshop Agenda

Dates: Sept 13-15th, 2012 (Thursday through Saturday)

Location: Oregon State University

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Weds Sept. 12th, 6-8pm

Dinner at a local venue for those who arrive early

Snack and refreshments will be available at Finley Hall or Arnold dining center will be open until 7pm

Thursday September 13

Location: CH2M Hill Alumni Center Williamette Room

* 8:00- 9am Continental Breakfast in Williamette Room

• 9:00- 9:15 Welcome and Introductions of the Organizing Committee - Pankaj Jaiswal, OSU

• 9:15- 9:30 Ruth Bastow: Insights and follow-up from EBI Crop Ontology Meeting

• 9:30- 10:00 Melissa Haendel; Ontology 101

• 10:00- 10:30 The Plant Ontology and the Trait Ontology- Laurel Cooper, OSU

* 10:30- 10:45 coffee break

• 10:45- 11:00 Elizabeth Arnaud, Bioversity /GCP

• 11:00- 11:15 Naama Menda- Sol Genomics Network

• 11:15- 11:30 Rex Nelson- SoyBase

• 11:30- 11:45 Mary Schaeffer- MaizeGDB

• 11:45- 12:00 0pen time for questions and discussion

* 12:00- 1:00 Lunch: Soup and Salad Buffet; Elle/Burlingham Room #111

• 1:00- 1:30 Introduction to Annotations and Data; Pankaj Jaiswal, OSU

• 1:30- 1:40 Bob Benson, Syngenta traits

• 1:40- 1:50 Jacques Legouis; Wheat trait lists INRA, France

• 1:50- 2:00 Pawel Krajewski, transPLANT

• 2:00- 2:10 Cyril Pommier, INRA France; Ephesis

• 2:10- 2:20- John Doonan, UK Phenomics Center

• 2:20- 2:30- Dan Bolser, EBI, Ensemble, potato genomics

• 2:30- 2:40 Reinhard Simon, CIP

* 2:40- 3:00 coffee break

• 3:00- 3:10- Victoria Blake, USDA, ARS, CA GrainGenes

• 3:10- 3:20 Luke Ramsay, Barley traits

• 3:20- 3:30 C Tom Hash, ICRISAT, sorghum

• 3:30- 3:40 Ken McNally, IRRI

• 3:40- 3:50 Michael Dingkuhn, IRRI

• 3:50- 4:00 Alice Clara Augustine, Monsanto

• 4:00- 4:10 Sonia Dias- Trait Information Portal, PGR secure

• 4:10- 4:20 Sunita Kumari, KBase

• 4:20- 4:30 Sharon Lewis; Syngenta- Information governance

• 4:30- 5:00 Open time for questions and discussion

* 5:00- 6:00 break, free time

* 6:00- 7:00 Pizza dinner- Elle/Burlingham Room #111

* 7:00 to 9:00pm 'Hands-on' Ontology Session

• Requesting terms using the SourceForge trackers

• Ontology editing: Using OBO Edit- tutorial and practice

Friday Sept 14th

* 8:00- 9am Continental Breakfast in Williamette Room

9:00- 9:20 TBA

9:20- 9:30 Sushma Naithani, OSU Horticulture

9:30-9:40 Laurent DeLuc, OSU Horticulture, grape research

* 9:40- 10:00 coffee break

• 10:00- 11:00

Webex presentation Barry Smith; Ontology site, Department of Philosophy site

11:00- 12:00 discussion

* 12:00-1:00 Lunch: Assorted Wraps with Soup and Salad; Elle/Burlingham Room #111

1:00- 1:15 breakout groups are organized and task is explained

1:15- 2:45 breakout groups work

* 2:45- 3:00 coffee break

3:00- 3:30- breakout groups report on progress, discussion

3:30- 5:00 breakout groups

5:00- 5:30 breakout groups report on progress, discussion

* 5:30- 6:30 break, free time

* 6:30- 9:00 Dinner and Social -Elle/Burlingham Room #111

Sat Sept. 15th- 8am to 12 noon

* 8:00- 9am Continental Breakfast in Williamette Room

9:00- 9:30 Biological examples and ontology applications; Pankaj Jaiswal, OSU

9:30- 10:30 Breakout groups and group discussion

* 10:30- 10:45 Coffee break

10:45 Summary and conclusions

Wrap and to-do lists for follow-up

12:00 Boxed Lunches