Summary New TO Terms- Spring 2012

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New terms added:

• plant aspect- made is_a stature or vigor trait (TO:0000133):

plant aspect: A stature or vigor trait (TO:0000133) that is a qualitative score of the visual appeal (ideotype) of the whole plant (PO:0000003).

New children of anatomy and morphology trait (TO:0000017)

Plant organ anatomy and morphology trait (TO:0000736) and child terms

• plant organ anatomy and morphology trait (TO:0000736): An anatomy and morphology trait (TO:0000017) which is associated with a plant organ (PO:0009008).

• plant axis anatomy and morphology trait (TO:0000738): plant organ anatomy and morphology trait (TO:0000736) which is associated a plant axis (PO:0025004).

• • shoot axis anatomy and morphology trait (TO:0000739): A plant axis trait (TO:0000738) which is associated with a shoot axis (PO:0025029).

• • • branch anatomy and morphology trait (TO:0000740): A shoot axis anatomy and morphology trait (TO:0000739) which is associated with a branch (PO:0025073).

• • • • tuber anatomy and morphology trait (TO:0000741): A branch anatomy and morphology trait (TO:0000740) which is associated with a tuber (PO:0004543).

• • • • • • subterranean tuber anatomy and morphology trait (TO:0000742): A tuber anatomy and morphology trait (TO:0000741) which is associated with a subterranean tuber (PO:0004547).
            • subterranean tuber shape (TO:0000743)
            • subterranean tuber size (TO:0000744)
            • subterranean tuber appearance (TO:0000745)
            • subterranean tuber mass (TO:0000746)

• phyllome anatomy and morphology trait (TO:0000747): A plant organ anatomy and morphology trait (TO:0000736) which is associated with a phyllome (PO:0006001).
  • leaf anatomy and morphology trait (TO:0000748): A phyllome anatomy and morphology trait (TO:0000747) which is associated with a leaf (PO:0025034).
    • vascular leaf anatomy and morphology trait (TO:0000419):A leaf anatomy and morphology trait (TO:0000748) which is associated with a vascular leaf (PO:0009025).
      • cotyledon anatomy and morphology trait (TO:0000749): A vascular leaf anatomy and morphology trait (TO:0000419) which is associated with a cotyledon (PO:0020030).
        • cotyledon color(TO:0000750): A cotyledon anatomy and morphology trait (TO:0000749) which is associated with the color of a cotyledon(PO:0020030).
        • cotyledon number (TO:0000751): A cotyledon anatomy and morphology trait (TO:0000749) which is associated with the number of cotyledons (PO:0020030).
        • cotyledon size (TO:0000752): A cotyledon anatomy and morphology trait (TO:0000749) which is associated with the size of a cotyledon(PO:0020030).

• coleoptile anatomy and morphology trait (TO:0000753) : A plant organ anatomy and morphology trait (TO:0000736) which is associated with a coleoptile (PO:0020033).
  • coleoptile color (TO:0000244): A coleoptile anatomy and morphology trait (TO:0000753) which is associated with the color of a coleoptile (PO:0020033). refer to: color PATO:0000014
  • coleoptile length (TO:0001007): A coleoptile anatomy and morphology trait (TO:0000753) which is associated with the length of a coleoptile (PO:0020033). refer to: length PATO:0000122

Cardinal Organ Part (TO:0000754) and new child terms:

• cardinal organ part anatomy and morphology trait (TO:0000754): An anatomy and morphology trait (TO:0000017) which is associated with a cardinal organ part (PO:0025001).
  • shoot internode anatomy and morphology trait (TO:0000755): A cardinal organ part anatomy and morphology trait (TO:0000754) which is associated with a shoot internode (PO:0005005).
    • stem internode anatomy and morphology trait (TO:0000756): A shoot internode anatomy and morphology trait (TO:0000755) which is associated with a stem internode (PO:0020142).
      • hypocotyl anatomy and morphology trait (TO:0000757): A stem internode anatomy and morphology trait (TO:0000756) which is associated with a hypocotyl (PO:0020100).
        • hypocotyl length (TO:0006065): A hypocotyl anatomy and morphology trait (TO:0000757) which is associated with the length of a hypocotyl (PO:0020100). Refer to length PATO:0000122
        • hypocotyl color (TO:0000759): A hypocotyl anatomy and morphology trait (TO:0000757) which is associated with the color of a hypocotyl (PO:0020100). Refer to color PATO:0000014
          • hypocotyl green (TO:0000760): A hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color green (PATO:0000320). Refer to: color (PATO:0000014); green (PATO:0000320)
          • hypocotyl green with bronze band (TO:0000761): A hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color green (PATO:0000320) with a bronze (PATO: TBA) band.
          • hypocotyl purple (TO:0000762): A hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color purple (PATO:0000951). Refer to: color (PATO:0000014); purple: PATO:0000951
          • hypocotyl dark purple (TO:0000763): A hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color dark purple (PATO:0001259). Refer to: color (PATO:0000014); dark purple: PATO:0001259
      • mesocotyl anatomy and morphology trait (TO:0000758): A stem internode anatomy and morphology trait (TO:0000756) which is associated with a mesocotyl (PO:0020037).
        • mesocotyl length (TO:0000544): A mesocotyl anatomy and morphology trait (TO:0000758) which is associated with the length of a mesocotyl (PO:0020037). Refer to length PATO:0000122

• stalk anatomy and morphology trait (TO:0000764): A cardinal organ part anatomy and morphology trait (TO:0000754) which is associated with a stalk (PO:0025066).
  • petiole anatomy and morphology trait (TO:0000765): A stalk anatomy and morphology trait (TO:0000764): which is associated with a petiole (PO:0020038).
    • petiole length (TO:0000766): A petiole anatomy and morphology trait (TO:0000765)that is associated with the length of a petiole (PO:0020038). Refer to length PATO:0000122
    • petiole shape(TO:0000767): A petiole anatomy and morphology trait (TO:0000765) that is associated with the shape of a petiole (PO:0020038). Refer to shape PATO:0000052
    • petiole size (TO:0000768): A petiole anatomy and morphology trait (TO:0000765) that is associated with the size of a petiole (PO:0020038). Refer to size PATO:0000117

Renamed and redefined terms:

• root term: plant trait (TO:0000387)- removed "ontology from name, defined based on entities and "
• anatomy and morphology trait (TO:0000017)- removed "related" from name and redefined.
• shoot system anatomy and morphology trait (TO:0000077)- was shoot anatomy and morphology trait
• mesocotyl length: was a child of embryo development, embryo related trait and mesocotyl anatomy and morphology trait. Now is only a child of mesocotyl anatomy and morphology trait.
• seedling hypocotyl: new child of hypocotyl anatomy and morphology trait.

Redefined terms:

These are ones that kept their original names