POC Outreach Events

Presentations and Posters

Year 2011

• Moss 2011 PO presentation (done via webex) Moss 2011 Meeting- PO presentation Sept 12, 2011

• NSF Plant Genome Awardee meeting Sept, 2011. Washington, DC. Submission: Media:2-pager_plant_ontology-2011.pdf

• ASPB Plant Biology meeting 2011

Plant Biology 2011 Outreach Booth

• International Botanical Congress (IBC2011), July 23rd – 30th 2011

Symposium hosted: Bio-Ontologies for the Plant Sciences under the Genetics, Genomics and Bioinformatics theme.

Please see the IBC 2011 Bio-Ontologies Symposium wiki page for more details.

Press release about the PO at IBC 2011: Media:IBC_2011_Congress_News_Thursday_28_July_WEB.pdf‎

• International Conference on Biomedical Ontologies IBCO 2011

LC co-organized the session on "From Fins to Limbs to Leaves: Facilitating Anatomy Ontology Interoperability" and presented a flash talk "The Plant Ontology: Development of a Reference Ontology for all Plants"

LC also presented the PO in the OBO Foundry session as part of the application for OBO Foundry Membership (link to this?)

• Phenotype RCN Meeting Durham, NC

Phenotype Ontology RCN-Plant Working Group Meeting, June 1-3, 2011

• Plant Working Group Meeting of the Phenotype Ontology RCN at the Google Campus in Boulder, CO.

All four (Plants, Arthropoda, Vertebrates and Bioinformatics) Working Group sessions ran concurrently to maximize the benefits of emerging results, group experiences and collective synergy.

• Semantic Web Workshop, June 6-7, 2011, Santa Fe, NM.

The Plant Ontology was represented at the 2011 Semantic Web Workshop. Hosted by Damian Gessler and the iPlant Collaborative, this two-day workshop focused on biological applications for semantic web services.

• Presentation to Physcomitrella Collaborators May 2011 Plant Ontology Webinar- May 2011 release

• Plant and Animal Genome XIX Conference PAG 2011, San Diego, CA. January 15-19, 2011

LC, RW, JP and DWS will present a poster and a computer demo.

LC took part in the Plant Phenotypes workshop and panel discussion

We also hosted a PO Collaborators workshop PO workshop on Sunday, Jan 16th, 2011.

Year 2010

• NETTAB 2010 conference on Biological Wikis, Nov 29-Dec 1, 2010, Naples, Italy

Justin Preece will present the poster: A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species" File:NETTAB 2010 poster proposal.pdf

• Seminar, Department of Botany and Plant Pathology, Oregon State University

Laurel presented a seminar: Bridging Plant Anatomy and Genomics in the Digital Era: Recent Advances at The Plant Ontology File:Cooper BPP final (LC 10-14-10).pdf

• Seminar, New York Botanical Garden. October 6, 2010. Ramona Walls presented a seminar 'Plant Ontology: A tool for structural, developmental and molecular plant biologists'

• American Society of Plant Biologists, Quebec, Montreal, Canada. Jul. 31 - Aug. 4, 2010

Laurel Cooper and Pankaj Jaiswal attended. Laurel presented a poster:The Plant Ontology: A Database for Plant Genomics.

Cooper, L., Elser, J., Walls, R., Stevenson, Dennis W., Smith, B., Mungall, C. J., Gandolfo, M. A., and Jaiswal, P. (2010). The Plant Ontology: A Database for Plant Genomics. American Society of Plant Biologists, Quebec, Montreal, Canada

We also organized a Plant Biology 2010 Outreach Booth: Plant Genome Resources Outreach Booth.

• PO-Gramene Annotation Workshop at Plant Biology 2010 PO-Gramene Annotation Workshop

A workshop to demonstrate the Phenote Annotation Tool was held at the ASPB Plant Biology Meeting in Montreal, Quebec, Canada.

You can find a link to the workshop page at: Phenote Workshop

• Botany 2010, Providence, RI. Jul. 31 - Aug. 4, 2010. Dennis Stevenson, Alejandra Gandolfo, and Ramona Walls attended.

Ramona Walls gave a presentation for the Developmental and Structural Section Abstract-BSA2010 File:Presentation-BSA2010.pdf

Walls, R., Cooper, L., Elser, J., Stevenson Dennis W., Smith, B., Mungall, C. J., Gandolfo, M. A., and Jaiswal, P. (2010). The Plant Ontology: a tool for structural, developmental, and molecular plant biologists. Providence, RI.

• Bio-Ontologies 2010: Semantic Applications in Life Sciences July 9th-10th, 2010

Laurel Cooper and Ramona Walls attended and presented a poster and a one page write-up that was presented as a 'flash update talk'

File:PO Poster BioOntologies2010.pdf

File:PO FlashTalk BioOntologies2010.pdf

File:Walls Cooper BioOntologies29.pdf

Walls, R., Cooper, L., Elser, J., Dennis W. Stevenson, Mungall, C. J., Gandolfo, M. A., and Jaiswal, P. (2010). The Plant Ontology: A Common Reference Ontology for Plants. Boston, MA.

• Cell Ontology Workshop,Jackson Laboratory, Bar Harbor, Mass. May 18th-19th, 2010

Laurel Cooper and Ramona Walls attended and Laurel presented a talk "Introduction to the Plant Ontology™"

• Plant and Animal Genome XVIII Conference, San Diego, CA. Jan. 9-13, 2010

Laurel Cooper and Justin Elser Poster and Computer Demonstration

Elser, J., Cooper, L., and Jaiswal, P. (2010). Plant Ontology: Databases And Applications. San Diego, CA.

Year 2009

• GCP Ontology Workshop Rome, Italy, April 20-22, 2009
  • Chih-Wei Tung, Gave a talk on "Plant and Trait Ontology"

• 3rd International Biocuration Conference Berlin, Germany, April 16-19, 2009
  • Chih-Wei Tung, POC poster presentation

• Plant & Animal Genome Conference San Diego, Jan 10-14, 2009
  • Chih-Wei Tung, POC poster presentation

Year 2008

• MetaCyc database workshop Ithaca, Oct 21, 2008
  • Chih-Wei Tung, present a talk "An Introduction to the Plant Ontology Database "
• Plant & Animal Genome Conference San Diego, Jan 12, 2008
  • Chih-Wei Tung, POC poster presentation

Year 2007

• ASPB 2007 Chicago, July 7-11, 2007
  • Chih-Wei Tung, presentation, poster abstract
    

• RCN Plant and Trait Ontology Workshop, CSHL, NY, June 10-11
  • Doreen Ware, Pankaj Jaiswal, Shuly Avraham, Chih-Wei Tung
    

• AGRONOMICS workshop " Ontologies, Standards and Best Practices", Gent, Belgium, May 21-23
  • Chih-Wei Tung, presentation

• ITMI Israel, April 16-20, 2007
  • Shuly Avraham, poster

• PAG XV CA, January 13-17, 2007
  • Chih-Wei Tung, poster abstract

Year 2006

• PAG XIV Ontology Workshop (2006): Ontologies for Databases
  • Anuradha Pujar: Development of a generic plant growth stage ontology
  • Katica Ilic: Application of plant ontologies

Year 2005

• PAG XIII Ontology Workshop (2005): Development and Implementation of Ontologies in the Database
  • Leonore Reiser: Using the Plant Ontologies
  • Katica Ilic: Controlled vocabularies for describing and cmparing phenotypes and gene expression
    
  • Pankaj: posters

• The 16th International Conference on Arabidopsis Research, Madison, WI, June 18, 2005
  • Katica Ilic and Leonore presentations
  • Poster

• The 8th Annual Bio-Ontologies Meeting at the ISMB, June 24, 2005
  • Pankaj Jaiswal, presentation

• The 47th Maize Genetic Conference, WI, March 2005 Poster

• Frontiers in Plant Biology, MO, April 2005 Poster

• The XVII International Botanical Congress, Vienna, Austria, July, 2005. Felipe, poster

Year 2004

• Annotation Demo, 04/07/2004
• Botany 2004, Abstract #347 (Toby.ppt) and #351 (Felipe.ppt)
• ASPB 2004, FL, July, Abstract #864, Poster (KI), Workshop (PJ and LR)
• PAG XII 2004, CA, January, Abstract # 927, Poster (Pankaj), abstract

Year 2002

• PAG X Bioinformatics: Database
  • Leszek Vincent: The POC and Plant ontologies (poster)
  • Leszek Vincent: The POC and Plant ontologies - silk purpose from a maize ear (workshop: ontology)